Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40435 66 / 5e-14 unknown protein AT3G56220 53 / 2e-09 bHLH transcription regulators (.1) AT1G29270 52 / 6e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029251 [exp] 209 / 1e-70 AT2G40435 91 / 5e-24 unknown protein Lus10010217 [exp] 42 / 4e-05 AT2G40435 152 / 1e-47 unknown protein Lus10017415 [exp] 40 / 0.0002 AT2G40435 146 / 3e-45 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G060800 [exp] 105 / 9e-30 AT1G29270 69 / 4e-15 unknown protein Potri.011G070000 [exp] 94 / 5e-25 AT1G29270 75 / 2e-17 unknown protein Potri.016G132600 [exp] 58 / 2e-11 AT2G40435 155 / 2e-49 unknown protein Potri.013G154100 [exp] 56 / 2e-10 AT2G40435 126 / 9e-38 unknown protein Potri.019G126800 [exp] 50 / 4e-08 AT2G40435 144 / 1e-44 unknown protein Potri.006G106900 [exp] 49 / 1e-07 AT2G40435 150 / 4e-47 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007304 pacid=23142461 polypeptide=Lus10007304 locus=Lus10007304.g ID=Lus10007304.BGIv1.0 annot-version=v1.0 ATGGTGTGCAGGATGCAGAGGAGGATTGCATTGCGCAGAAAGCTTAACATTCTCAGAATGATCACTCATTCCCAATCTGTGCAACAGAGCTCAACCATCA GGGATGCTTACGTGTACATCTACCAGCTGAAACTCAAGCTGGAGGCAATGAAGAAAGAGCTGGAGGATTTGGCAGCAATCAGAAGCCAGTTTCCTAAGAG GGAAGTGAAGGTGGAGAAGGGTGAAAAGGGGTTTGAGGTGAAAGTGACAAGCGAGAAGGGGAAGGATAAGTTGGTTTCCGTGTTGGAGGTGTTTGAAGAG ATGAAGCTCAGTGTTTTGCATGGTAAAGTGACGTGTAGCCCTTATTTCTCCATGGAAGCCATTGTTGTCGAGACTGAACGTGGAGCAGCTGATGTTGAAA GTGTCACTCAAGCTCTTGTGAAGGCGATTAGTAACAGAGGTTTTGTGTAG
AA sequence Show only first row Show all	>Lus10007304 pacid=23142461 polypeptide=Lus10007304 locus=Lus10007304.g ID=Lus10007304.BGIv1.0 annot-version=v1.0 MVCRMQRRIALRRKLNILRMITHSQSVQQSSTIRDAYVYIYQLKLKLEAMKKELEDLAAIRSQFPKREVKVEKGEKGFEVKVTSEKGKDKLVSVLEVFEE MKLSVLHGKVTCSPYFSMEAIVVETERGAADVESVTQALVKAISNRGFV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29270			unknown protein		Lus10007304 [exp]	0	1
AT1G15940			Tudor/PWWP/MBT superfamily pro...		Lus10009948 [exp]	1.4	0.8409
AT4G13540			unknown protein		Lus10004393 [exp]	2.0	0.8330
AT2G40435			unknown protein		Lus10029251 [exp]	5.7	0.8302
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10019652 [exp]	6.9	0.7885
AT5G64350		FKP12, ATFKBP12...	ARABIDOPSIS THALIANA FK506-BIN...		Lus10016586 [exp]	8.9	0.8150
					Lus10029656 [exp]	11.0	0.8298
AT2G45250			Integral membrane protein hemo...		Lus10003319 [exp]	11.2	0.8227
AT1G15940			Tudor/PWWP/MBT superfamily pro...		Lus10030133 [exp]	11.5	0.8130
AT5G10310			unknown protein		Lus10025740 [exp]	14.4	0.8046
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Lus10023967 [exp]	15.7	0.7960

Compare expression of checked genes

Lus10007304 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.