Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29280 164 / 1e-50 WRKY ATWRKY65, WRKY65 WRKY DNA-binding protein 65 (.1) AT3G58710 153 / 3e-46 WRKY ATWRKY69, WRKY69 RABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 69, WRKY DNA-binding protein 69 (.1.2) AT2G34830 136 / 3e-38 WRKY ATWRKY35, WRKY35, MEE24 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1) AT1G30650 133 / 4e-37 WRKY ATWRKY14, AR411, WRKY14 WRKY DNA-binding protein 14 (.1) AT4G01250 114 / 7e-31 WRKY ATWRKY22, WRKY22 WRKY family transcription factor (.1) AT5G52830 107 / 5e-28 WRKY ATWRKY27, WRKY27 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) AT5G45050 110 / 6e-28 WRKY ATWRKY16, TTR1 TOLERANT TO TOBACCO RINGSPOT NEPOVIRUS 1, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT4G24240 106 / 2e-27 WRKY ATWRKY7, WRKY7 WRKY DNA-binding protein 7 (.1) AT2G30590 105 / 4e-27 WRKY WRKY21 WRKY DNA-binding protein 21 (.1) AT4G23550 104 / 5e-27 WRKY ATWRKY29, WRKY29 WRKY family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029252 [exp] 276 / 1e-94 AT1G29280 166 / 9e-51 WRKY DNA-binding protein 65 (.1) Lus10015229 [exp] 157 / 5e-48 AT1G29280 197 / 1e-62 WRKY DNA-binding protein 65 (.1) Lus10005428 [exp] 155 / 2e-47 AT1G29280 194 / 1e-61 WRKY DNA-binding protein 65 (.1) Lus10038426 [exp] 134 / 1e-38 AT2G34830 252 / 1e-81 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1) Lus10036399 [exp] 108 / 3e-29 AT4G01250 207 / 2e-66 WRKY family transcription factor (.1) Lus10007907 [exp] 110 / 1e-28 AT4G01250 228 / 2e-72 WRKY family transcription factor (.1) Lus10027538 [exp] 109 / 2e-28 AT5G52830 171 / 1e-49 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) Lus10039295 [exp] 108 / 2e-28 AT5G52830 170 / 4e-50 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) Lus10041600 [exp] 108 / 3e-28 AT2G23320 276 / 2e-91 WRKY DNA-binding protein 15 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G060900 [exp] 206 / 4e-67 AT1G29280 247 / 3e-82 WRKY DNA-binding protein 65 (.1) Potri.011G070100 [exp] 201 / 4e-65 AT1G29280 237 / 3e-78 WRKY DNA-binding protein 65 (.1) Potri.011G157100 [exp] 135 / 8e-38 AT1G30650 305 / 1e-99 WRKY DNA-binding protein 14 (.1) Potri.001G460600 [exp] 134 / 2e-37 AT1G30650 322 / 2e-106 WRKY DNA-binding protein 14 (.1) Potri.014G119800 [exp] 119 / 3e-33 AT3G58710 124 / 7e-34 RABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 69, WRKY DNA-binding protein 69 (.1.2) Potri.002G195300 [exp] 115 / 9e-32 AT2G34830 120 / 1e-31 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1) Potri.014G090300 [exp] 115 / 9e-31 AT4G01250 250 / 1e-81 WRKY family transcription factor (.1) Potri.002G164400 [exp] 115 / 1e-30 AT4G01250 244 / 4e-79 WRKY family transcription factor (.1) Potri.017G149000 [exp] 114 / 6e-30 AT5G52830 192 / 2e-57 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) Potri.004G072000 [exp] 111 / 8e-29 AT5G52830 182 / 2e-53 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10007305 pacid=23142484 polypeptide=Lus10007305 locus=Lus10007305.g ID=Lus10007305.BGIv1.0 annot-version=v1.0 ATGGAGGACAAGTACCGACGAAGAAGTCTGTCGTTGCTGATGATGACCAGCAGCGATGAAGTTGTAGCACAGGAGGAGAGTCAGAACGAGAGTGGCTCTC CTGACTCCCCTCCTTATCGCGACGCTAAGGTGGCATCCACTTCCACTTCTTCTCCCAAAAGAAGTGGGAAGAGAGGAGCACATAAGAGGGTGGTGTCGAT CCCGATCAAGGACGTGGAAGGATTCCGGCTGAAGGGGGAGAATGCTCCGCCGCCGGCGGATTCTTGGGCCTGGAGAAAGTACGGCCAGAAGCCCATCAAG GGATCTCCTTACCCCAGAGGATACTACAGATGTAGCAGTTCAAAGGGATGCCCAGCTAGGAAACAAGTGGAGAGGAGCCGTGTGGACCCCACCATGCTAG TTATCACCTACTCCTCCGACCACAACCACCCTTGGCCGCCACCTTCAAGAATCCACCACCACCATTCCAAACCCGCCGCCGCCACTCCGATTTGCGGGGA AGGGAGCGGCGGCTTCGGATGTGGGGATGTCGGATATGTTTTTGCCGATGAGGGAGGAGGACGAGTTGTTGTTTGCTGA
AA sequence Show only first row Show all	>Lus10007305 pacid=23142484 polypeptide=Lus10007305 locus=Lus10007305.g ID=Lus10007305.BGIv1.0 annot-version=v1.0 MEDKYRRRSLSLLMMTSSDEVVAQEESQNESGSPDSPPYRDAKVASTSTSSPKRSGKRGAHKRVVSIPIKDVEGFRLKGENAPPPADSWAWRKYGQKPIK GSPYPRGYYRCSSSKGCPARKQVERSRVDPTMLVITYSSDHNHPWPPPSRIHHHHSKPAAATPICGEGSGGFGCGDVGYVFADEGGGRVVVC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10007305 [exp]	0	1
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10024362 [exp]	1.0	0.9668
AT2G20030			RING/U-box superfamily protein...		Lus10012975 [exp]	1.4	0.9633
AT2G46370		FIN219, JAR1	JASMONATE RESISTANT 1, FAR-RED...		Lus10003039 [exp]	1.7	0.9589
AT3G09920		PIP5K9	phosphatidyl inositol monophos...		Lus10022606 [exp]	2.6	0.9536
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Lus10033400 [exp]	4.2	0.9496
AT2G35270	AT-hook	GIK, 2-ATH, AHL...	GIANT KILLER, Predicted AT-hoo...		Lus10030966 [exp]	5.0	0.9540
AT5G13500			unknown protein		Lus10036037 [exp]	5.7	0.9332
AT5G59530			2-oxoglutarate (2OG) and Fe(II...		Lus10033875 [exp]	5.7	0.9418
AT1G54100		ALDH7B4	aldehyde dehydrogenase 7B4 (.1...		Lus10013155 [exp]	6.0	0.9539
AT1G63380			NAD(P)-binding Rossmann-fold s...		Lus10007038 [exp]	6.3	0.9551

Compare expression of checked genes

Lus10007305 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.