Plant FIBer expression Database

Lus10007307 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G18810 56 / 1e-09 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029254
[exp]
205 / 7e-67 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G070400
[exp]
105 / 7e-30 ND /
Potri.004G061100
[exp]
100 / 8e-28 ND /
Potri.001G393001
[exp]
77 / 4e-19 ND /
Potri.011G108700
[exp]
63 / 2e-13 AT4G15140 42 / 9e-06 unknown protein
Potri.001G389150
[exp]
62 / 4e-13 ND /
PFAM info
Representative CDS sequence
>Lus10007307 pacid=23142458 polypeptide=Lus10007307 locus=Lus10007307.g ID=Lus10007307.BGIv1.0 annot-version=v1.0
ATGGAAGAAATGACATGTTCAACTTCTTCCACTTCTTCACCTTCCTCTGCCTCTTCATCCAATTCACCCCCCACCACCAAGCTCCAGCTAGTGTCAAAAT
CAGTCTCCGACAGGCTCCTCAACAAGTTCTTCGATGCCAGCGAGTTCGATTTCGAGTACGAGAAGAGCGGACTGTGGTCTCCTCCCTTGAAGAGGACGGT
GTTCATGAGCTCCAAAGGGGACAGAATGTTTACAGAAGAGGAGATGGTCCAGAAGCTTAGGAGAGTCATGGATGGCACTCACCGATCGAGAAGACGACAC
AAGAGTGTATACAGAAATCCAATGAAAATTATCAGTAAGCTAGAGTGGGTTGGTTCATTTGGTTTGAACCTAACAACCGAGTCTCTCGAAGTGTCATTTT
TCGCAGTGGCTACGGCTTCCCCTGCCACTGCATCTGCCTCTTCTGTATCCACTAAAGGGTATCCCTGA
AA sequence
>Lus10007307 pacid=23142458 polypeptide=Lus10007307 locus=Lus10007307.g ID=Lus10007307.BGIv1.0 annot-version=v1.0
MEEMTCSTSSTSSPSSASSSNSPPTTKLQLVSKSVSDRLLNKFFDASEFDFEYEKSGLWSPPLKRTVFMSSKGDRMFTEEEMVQKLRRVMDGTHRSRRRH
KSVYRNPMKIISKLEWVGSFGLNLTTESLEVSFFAVATASPATASASSVSTKGYP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10007307
[exp]
0 1
Lus10029254
[exp]
1.7 0.8933
AT5G35670 IQD33 IQ-domain 33 (.1) Lus10002265
[exp]
2.4 0.8739
AT1G26260 bHLH CIB5, bHLH076 cryptochrome-interacting basic... Lus10023562
[exp]
4.6 0.8478
AT4G32000 Protein kinase superfamily pro... Lus10001937
[exp]
4.9 0.7682
AT1G28540 unknown protein Lus10042196
[exp]
10.6 0.7734
AT1G59640 bHLH ZCW32, bHLH031... BIG PETAL UB, BIG PETAL P (.1.... Lus10030807
[exp]
11.4 0.7348
AT5G49800 Polyketide cyclase/dehydrase a... Lus10042398
[exp]
12.0 0.7977
AT5G14510 ARM repeat superfamily protein... Lus10022275
[exp]
14.7 0.7896
AT4G34530 bHLH bHLH063, CIB1 cryptochrome-interacting basic... Lus10040448
[exp]
16.2 0.7871
AT3G13000 Protein of unknown function, D... Lus10034787
[exp]
16.5 0.7592

Lus10007307 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.