Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29290 54 / 8e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029256 [exp] 119 / 2e-36 AT1G29290 64 / 2e-14 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G061300 [exp] 76 / 3e-19 AT1G29290 71 / 3e-17 unknown protein Potri.011G070500 [exp] 46 / 1e-07 AT1G29290 42 / 7e-06 unknown protein Potri.001G393101 [exp] 36 / 0.0006 AT1G29290 45 / 1e-07 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007309 pacid=23142478 polypeptide=Lus10007309 locus=Lus10007309.g ID=Lus10007309.BGIv1.0 annot-version=v1.0 ATGGCTCATCGTGCTCATTCCGCCACCCTCTTGATTCTACTATCCCTCCTCTCAGTTTCCCTCTTCCTAAACGGCGCCGAATCCAGAAAGCTACTGGCGA ACGACGGTGACAACAAAGAAGAAACCACCGTTTCATCTCTGTTCCAGAGCTTGCTACTGATGAGCTCGCTTCCGAAGGGAACCGTCCCAGCTTCGTCGCC GAGCAAGAAGGGAAATTCGTCGGTGGATAATGTGGGTCGTTTCGAGAGGCATCTTACGAGTAATGATCGGATTCTACGCTCTGTTCCAAGCCCTGGAATG GGTCATTAG
AA sequence Show only first row Show all	>Lus10007309 pacid=23142478 polypeptide=Lus10007309 locus=Lus10007309.g ID=Lus10007309.BGIv1.0 annot-version=v1.0 MAHRAHSATLLILLSLLSVSLFLNGAESRKLLANDGDNKEETTVSSLFQSLLLMSSLPKGTVPASSPSKKGNSSVDNVGRFERHLTSNDRILRSVPSPGM GH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29290			unknown protein		Lus10007309 [exp]	0	1
AT1G70090		GATL9, LGT8	GALACTURONOSYLTRANSFERASE-LIKE...		Lus10010727 [exp]	1.0	0.9439
AT1G12610	AP2_ERF	DDF1, DREB1F, F...	DWARF AND DELAYED FLOWERING 1,...		Lus10006334 [exp]	4.2	0.9418
AT1G59710			Protein of unknown function (D...		Lus10036694 [exp]	4.7	0.9263
AT5G38700			unknown protein		Lus10002433 [exp]	5.3	0.9436
AT1G48880		TBL7	TRICHOME BIREFRINGENCE-LIKE 7 ...		Lus10029761 [exp]	6.2	0.8878
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10016847 [exp]	6.3	0.9400
AT1G12610	AP2_ERF	DDF1, DREB1F, F...	DWARF AND DELAYED FLOWERING 1,...		Lus10001871 [exp]	6.5	0.9350
AT1G64700			unknown protein		Lus10008274 [exp]	6.5	0.9372
AT2G25270			unknown protein		Lus10038102 [exp]	7.7	0.9153
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Lus10017050 [exp]	8.1	0.9136

Compare expression of checked genes

Lus10007309 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.