Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06410 1313 / 0 ATTPSA, ATTPS7 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) AT4G17770 1160 / 0 ATTPS5 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) AT1G68020 1132 / 0 ATTPS6 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) AT1G23870 1103 / 0 ATTPS9 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) AT1G70290 1093 / 0 ATTPSC, ATTPS8 trehalose-6-phosphatase synthase S8 (.1) AT1G60140 1092 / 0 ATTPS10 TREHALOSE PHOSPHATE SYNTHASE 10, trehalose phosphate synthase (.1) AT2G18700 996 / 0 ATTPSB, ATTPS11 TREHALOSE-6-PHOSPHATE SYNTHASE 11, trehalose phosphatase/synthase 11 (.1) AT1G16980 438 / 4e-141 ATTPS2 TREHALOSE -6-PHOSPHATASE SYNTHASE S2, trehalose-phosphatase/synthase 2 (.1) AT1G78580 424 / 3e-134 ATTPS1 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) AT4G27550 415 / 1e-132 ATTPS4 ARABIDOPSIS THALIANA TREHALOSE PHOSPHATASE/SYNTHASE 4, trehalose-6-phosphatase synthase S4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029258 [exp] 1678 / 0 AT1G06410 1338 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10005425 [exp] 1537 / 0 AT1G06410 1338 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10015231 [exp] 1535 / 0 AT1G06410 1337 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10020741 [exp] 1248 / 0 AT1G06410 1278 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10029821 [exp] 1243 / 0 AT1G06410 1284 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10034585 [exp] 1161 / 0 AT1G68020 1462 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Lus10021805 [exp] 1142 / 0 AT1G68020 1452 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Lus10030853 [exp] 1110 / 0 AT1G60140 1388 / 0.0 TREHALOSE PHOSPHATE SYNTHASE 10, trehalose phosphate synthase (.1) Lus10030635 [exp] 1097 / 0 AT1G60140 1367 / 0.0 TREHALOSE PHOSPHATE SYNTHASE 10, trehalose phosphate synthase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G070900 [exp] 1488 / 0 AT1G06410 1343 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Potri.004G061500 [exp] 1461 / 0 AT1G06410 1286 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Potri.003G094500 [exp] 1198 / 0 AT4G17770 1442 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) Potri.001G139500 [exp] 1179 / 0 AT4G17770 1429 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) Potri.010G104500 [exp] 1158 / 0 AT1G68020 1415 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Potri.008G136500 [exp] 1151 / 0 AT1G68020 1410 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Potri.012G078500 [exp] 1136 / 0 AT1G23870 1284 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) Potri.015G074000 [exp] 1132 / 0 AT1G23870 1285 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) Potri.006G175500 [exp] 1007 / 0 AT2G18700 1151 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 11, trehalose phosphatase/synthase 11 (.1) Potri.018G097700 [exp] 1006 / 0 AT2G18700 1118 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 11, trehalose phosphatase/synthase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF02358 [flax] [poplar] Trehalose_PPase Trehalose-phosphatase CL0113 [flax] [poplar] GT-B PF00982 [flax] [poplar] Glyco_transf_20 Glycosyltransferase family 20
Representative CDS sequence Show only first row Show all	>Lus10007311 pacid=23142498 polypeptide=Lus10007311 locus=Lus10007311.g ID=Lus10007311.BGIv1.0 annot-version=v1.0 ATGATGTCCAAATCGTACACCAATCTATTGGATCTAGCTTCCGGTAACTTTCCGATGATGAGTCAACAAAGGGACAAGAAAAGGTTGACTCGTGTGACGA CAGTTCCTGGGATTATATCCGAGCTTGACGATGATCAGGCCAATAGCGTTGCTTCGGACGTGCAGTCTTCTTTAATCCAGGACCGGATTATAATCGTAGC AAATCAGCTCCCCGTGAAGGCCAAGCGCAGACCGGATAATAAAGGCTGGAGCTTTAGTTGGGATGAGGATTCCTTGCTGTTACAGTGTAAAGATGGTTTC AGTGAAGATATGGAAGTTATATACGTTGGTTCTTTGCGAGTTGAAGTTGATACTAACGAGCAGGACGATGTTTCCCAGCTTTTGTTGGATAAGTTCAAGT GTGTCCCTGCATTTTTGCCTCCTGATATTTTGGCTAAGTTCTATAACGGGTTTTGCAAACAGCATTTGTGGCCTCTTTTCCATTACATGCTTCCCTTTTC AGCTAATCATGGCGGGAGATTCGATCGGTCCCTGTGGGAGGCGTATGTTGCAGCGAATAAGATCTTCTCCCAGAGGGTGATCGAGGTTATAAACCCCGAG GATGACTATGTCTGGATTCATGACTACCATTTAATGGTGCTTCCAACTTTCTTAAGGAGGAGGTTCACTAGATTGAGAATGGGGTTCTTCTTGCATAGTC CGTTTCCTTCTTCCGAGATATACCGGACTTTGCCAGTGAGGGAAGAGATTCTTAAAGCGCTTCTGAACTCCGATCTTATTGGATTCCATACCTTTGATTA TGCTCGGCATTTCTTGTCTTGCTGTAGTCGGATGGTGGGGTTGGAGTATCAGTCGAAACGAGGATATATTGGGTTGGAATACTACGGTAGGACGATTGGG ATCAAGATCATGCCGGTTGGGATACACATGGGACAGATCGAGACAGTTTTGAAGCAGCCGGATAATGAATGGAGGGTGAAAGAGCTGAAACAGCAGCTCG AAGGGAAGACAGTTTTACTGGGTGTTGATGATATGGACATCTTTAAAGGTCTTAACTTGAAGCTCCTGGCGATGGAGGCGATGCTGAAACAGCATCCGAA GTGGCAAGGAAGGGCGGTTCTAGTCCAGATTGCTAATCCCGCTAGGGGAAGCGGGAAAGACCTCGAAGATGTGCAGGCCGAGATTCAGGAAAGCTGCAAG AGGATTAACGAGTCGTTTGGCCGACCTGGCTATGAACCGGTTATCTTCATTGATCGACCGGTATCGATTAGTGAAAGATCGGCGTACTACAATGTTGCGG AGTGTGTTGTGGTGTCTGCTGTAAGGGATGGATTGAACCTTACTCCGTACGAGTATATCGTTTGTAGGCATGGCTCGAGTTCAAGTTCGGAATCTAGTAG TGGTCCCAAGAAGAGCATGCTTGTTGTTTCGGAATTCATCGGATGTTCACCTTCGCTCAGTGGTGCTATTCGGATCAATCCATGGAACGTGGAAGCTACA GCCGAGGCAATGAACGAGGCGATCTCGATGTCCGATCACGAGAAGCAGCTACGACACGAGAAGCACTACCGATACGTAAGTACTCACGATGTTGCGTACT GGTCGAGGAGCTTTTTCCAAGATCTGGAAAGGGCTTGCAGAGACCATTTCATAAGGCGGTGTTGGGGAATAGGTTTGGGATTCGGTTTCAGGGTCGTTGC ACTAGATCCTAATTTCAGAAAGCTGTCCATTGATGAACTTGTGAATGCATATTTGAAGTCGAAAAAAAGAGCCATTCTGCTGGACTATGATGGAACTGTG ATGCCACAAACATCGATCAACAAGACACCGAGTCCGGAAATACTTTCGATCATCAACACCTTATGTGCTGATGCTAAGAACAAAGTGTTTGTTGTTAGTG GGAGAGGAAAGGATAGTTTAGGTAAGTGGTTTTCTCCTTGCAAGAAACTCGGAATCGCTGCGGAACATGGCTATTACATGAGGTGGTCTGCTGACAAGGA GTGGGAAACTTGTGGGCAGAACTGCGATTTTGGGTGGTTTCAGATTGTTGAGCCTGTAATGAAGTTGTATACAGAAGCCACTGATGGTTCGTACATTGAG GCCAAAGAGAGTGCCTTGGTCTGGCACCATAGAGATGCAGACCCGGGATTCGGTGCTAGCCAGGCGAAAGAGATGTTGGACCATCTCGAAAGCGTGCTCG CTAACGAACCTGTTTCTGTGAAAAGCGGTCAATCCATCGTCGAAGTAAAGCCTCAGGGGGTTAGCAAAGGTTTGGTGGCAGAGAAGATATTCACATCAAT GTCCGAGGACGGGAGACAGGCTGACTTTGTCCTGTGCATTGGCGACGACAGGTCAGACGAAGACATGTTCGAGAGAATCGAGAATGCCTTGACGAGTGGA ATGCTTTCCACGAGCACAAATGTGTTTGCTTGCACAGTTGGCCAGAAACCAAGCAAAGCCAAGTACTACTTGGACGACACGACTGATGTGATCAACATGC TCAGAGCTCTCGCAGATGATTCGGACCCTTGTGCTTCCGACGACAGCGACTCATCATCATAA
AA sequence Show only first row Show all	>Lus10007311 pacid=23142498 polypeptide=Lus10007311 locus=Lus10007311.g ID=Lus10007311.BGIv1.0 annot-version=v1.0 MMSKSYTNLLDLASGNFPMMSQQRDKKRLTRVTTVPGIISELDDDQANSVASDVQSSLIQDRIIIVANQLPVKAKRRPDNKGWSFSWDEDSLLLQCKDGF SEDMEVIYVGSLRVEVDTNEQDDVSQLLLDKFKCVPAFLPPDILAKFYNGFCKQHLWPLFHYMLPFSANHGGRFDRSLWEAYVAANKIFSQRVIEVINPE DDYVWIHDYHLMVLPTFLRRRFTRLRMGFFLHSPFPSSEIYRTLPVREEILKALLNSDLIGFHTFDYARHFLSCCSRMVGLEYQSKRGYIGLEYYGRTIG IKIMPVGIHMGQIETVLKQPDNEWRVKELKQQLEGKTVLLGVDDMDIFKGLNLKLLAMEAMLKQHPKWQGRAVLVQIANPARGSGKDLEDVQAEIQESCK RINESFGRPGYEPVIFIDRPVSISERSAYYNVAECVVVSAVRDGLNLTPYEYIVCRHGSSSSSESSSGPKKSMLVVSEFIGCSPSLSGAIRINPWNVEAT AEAMNEAISMSDHEKQLRHEKHYRYVSTHDVAYWSRSFFQDLERACRDHFIRRCWGIGLGFGFRVVALDPNFRKLSIDELVNAYLKSKKRAILLDYDGTV MPQTSINKTPSPEILSIINTLCADAKNKVFVVSGRGKDSLGKWFSPCKKLGIAAEHGYYMRWSADKEWETCGQNCDFGWFQIVEPVMKLYTEATDGSYIE AKESALVWHHRDADPGFGASQAKEMLDHLESVLANEPVSVKSGQSIVEVKPQGVSKGLVAEKIFTSMSEDGRQADFVLCIGDDRSDEDMFERIENALTSG MLSTSTNVFACTVGQKPSKAKYYLDDTTDVINMLRALADDSDPCASDDSDSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10007311 [exp]	0	1
AT2G01690			ARM repeat superfamily protein...		Lus10003702 [exp]	4.2	0.8766
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Lus10028187 [exp]	4.2	0.8926
AT1G60490		PI3K, ATVPS34	PHOSPATIDYLINOSITOL 3-KINASE, ...		Lus10030885 [exp]	9.1	0.8920
AT5G43920			transducin family protein / WD...		Lus10022847 [exp]	10.6	0.8744
AT1G71490			Tetratricopeptide repeat (TPR)...		Lus10025488 [exp]	16.0	0.8137
AT4G28220		NDB1	NAD(P)H dehydrogenase B1 (.1)		Lus10018541 [exp]	19.1	0.8888
AT2G01690			ARM repeat superfamily protein...		Lus10021813 [exp]	20.5	0.8638
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Lus10042101 [exp]	20.8	0.8680
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Lus10002826 [exp]	22.0	0.8780
AT5G11380		DXPS3	1-deoxy-D-xylulose 5-phosphate...		Lus10013117 [exp]	22.3	0.8752

Compare expression of checked genes

Lus10007311 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.