Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29300 434 / 2e-149 UNE1 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) AT1G53380 365 / 1e-122 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT3G14870 341 / 7e-113 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT2G45260 270 / 6e-86 Plant protein of unknown function (DUF641) (.1) AT3G60680 205 / 3e-60 Plant protein of unknown function (DUF641) (.1) AT5G58960 161 / 4e-44 GIL1 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT4G34080 155 / 4e-44 Plant protein of unknown function (DUF641) (.1) AT2G32130 141 / 4e-40 Plant protein of unknown function (DUF641) (.1) AT4G33320 145 / 9e-40 Plant protein of unknown function (DUF641) (.1) AT4G36100 87 / 3e-19 Sec1/munc18-like (SM) proteins superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029259 [exp] 880 / 0 AT1G29300 419 / 6e-144 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Lus10005424 [exp] 563 / 0 AT1G29300 365 / 3e-123 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Lus10015232 [exp] 529 / 0 AT1G29300 377 / 7e-128 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Lus10001989 [exp] 262 / 5e-83 AT2G45260 671 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10030291 [exp] 260 / 3e-82 AT2G45260 668 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10009284 [exp] 209 / 1e-61 AT3G60680 541 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10008587 [exp] 174 / 6e-49 AT2G45260 266 / 1e-84 Plant protein of unknown function (DUF641) (.1) Lus10009923 [exp] 172 / 2e-48 AT2G45260 275 / 2e-88 Plant protein of unknown function (DUF641) (.1) Lus10024190 [exp] 172 / 3e-48 AT2G45260 270 / 1e-86 Plant protein of unknown function (DUF641) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G071000 [exp] 575 / 0 AT1G29300 483 / 3e-169 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Potri.004G061600 [exp] 552 / 0 AT1G29300 485 / 6e-170 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Potri.001G387700 [exp] 388 / 2e-131 AT1G53380 524 / 0.0 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.011G108000 [exp] 381 / 1e-128 AT1G53380 531 / 0.0 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.002G145900 [exp] 278 / 3e-89 AT2G45260 692 / 0.0 Plant protein of unknown function (DUF641) (.1) Potri.002G145000 [exp] 206 / 6e-61 AT3G60680 494 / 4e-172 Plant protein of unknown function (DUF641) (.1) Potri.014G066600 [exp] 192 / 1e-55 AT3G60680 522 / 0.0 Plant protein of unknown function (DUF641) (.1) Potri.009G041000 [exp] 178 / 2e-49 AT5G58960 466 / 2e-159 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.013G155400 [exp] 174 / 3e-49 AT2G45260 300 / 4e-98 Plant protein of unknown function (DUF641) (.1) Potri.014G067600 [exp] 169 / 2e-48 AT2G45260 462 / 3e-163 Plant protein of unknown function (DUF641) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04859 [flax] [poplar] DUF641 Plant protein of unknown function (DUF641)
Representative CDS sequence Show only first row Show all	>Lus10007312 pacid=23142470 polypeptide=Lus10007312 locus=Lus10007312.g ID=Lus10007312.BGIv1.0 annot-version=v1.0 ATGGAGACGGCCAAATGCCGATCGCTCCCTACCGGCGGCAACAAGAGCAGCAGCAAGATCGCCAGAACATTCCAAAAGGTCATCAATCTCAAAACCGCCA CCACCAAAGTCTCCTCCAACAACGGCATCGGCATCTGCATCCTCACTCAGCCGACCAAGCTCTCCGACGACCACCTCCACCACCACCCTAACAAGGATGC CAAATCCGCCGCCAAGCGCGGCGCCGTCCTGGAAGCTCTCCTAGCGAAAATGTTCGCCGAGGTGACCGCGATCAAAGCCGCCTACGCCGAGCTCCAGATG GCGCAGAATCCTTACTCCATCGAGGCGATCCAGGCCGCCGATCAGCTCATCGTCGACGAGCTCAAAACGCTTTCCGATTTGAAGCGAAGCTTCATAAACA ACGAGCTCGATTTCATCTCGCCGCAGGTGACTGTGATGCTGGCCGAGATCCAGGAGCAGCAGAGCTTGATGAAGACTTACGATATCACGATAAAGAAGCT TGAAGCCGAAGCCGATTCGAAAACATCCGAATCCGAATCGATTAAGAAGCTTCTGGATGAGTACGCATCGTTTAACCGGAATCTCGGAAAGAAGCTTAAC GCCAGCGGTCCGTTGCCGATGTTCGACAATATTCAACTCTCCGTACTGAATCCGTCGCATTTCGTCAGCTGCCTCCACTACGCTTTGAGATCCATGAGGA GCTTCTCGAAATTGATGATCCGCGAGATGGAATCGGCTCACTGGGAGCTCGACGCCGCGGCGGCGGCGATCGAGCCGAAGCTAGGGTTTCCGATTTCGAA GCAGAACCGCTGCTTCGTCTTCGAATCGTTCGTTTCCAAGACGATGTTCGAAGGGTTCAATCACCTCAATTTCACCGTCGTCGCGAATGAATCAATGACG GAGGAGAACCACGACGGCGACAATCACCGCCGCAGGGAGAATTGCTTCGGCAAGTTTAAAAAGATGAAGGCGGTGAATCTCCGGCATTACTTAACTCAGA ATCCGAACTCGTCGTTCGCCAAATTTACTCGAGGGAAGTATTCGCAGCTCGTCCACGCCAAGATGGAAGTTTCCCTGTTTGGAAATTTGAACCAGAGGAA AGCGGTGACGTCAGGCGCGTTCCCAGACACGGAATTCTTCGGCGCGTTTGCGGAGATGGCGCGGCGCGTGTGGGTGTTGAATCTGTTGGCGTTGTCGTTC GGCGAGCAGCTACACATTTTCCAGGTGAGGAAGAACTGCCGGTTCTCGGAGGTGTATATGGAGAGCGTGAGCGAGGAGGCGCCCGGAGGTAGTGGCGCCG ATGTGAGGGTGGGATTCACGGTGGTTCCAGGGTTTAAGATTGGGAAGACGGTGGTACAGAGTCAGGTTTATTTGACGCCGGCGGGTAAATCTCCGGCCAG GCGTTGA
AA sequence Show only first row Show all	>Lus10007312 pacid=23142470 polypeptide=Lus10007312 locus=Lus10007312.g ID=Lus10007312.BGIv1.0 annot-version=v1.0 METAKCRSLPTGGNKSSSKIARTFQKVINLKTATTKVSSNNGIGICILTQPTKLSDDHLHHHPNKDAKSAAKRGAVLEALLAKMFAEVTAIKAAYAELQM AQNPYSIEAIQAADQLIVDELKTLSDLKRSFINNELDFISPQVTVMLAEIQEQQSLMKTYDITIKKLEAEADSKTSESESIKKLLDEYASFNRNLGKKLN ASGPLPMFDNIQLSVLNPSHFVSCLHYALRSMRSFSKLMIREMESAHWELDAAAAAIEPKLGFPISKQNRCFVFESFVSKTMFEGFNHLNFTVVANESMT EENHDGDNHRRRENCFGKFKKMKAVNLRHYLTQNPNSSFAKFTRGKYSQLVHAKMEVSLFGNLNQRKAVTSGAFPDTEFFGAFAEMARRVWVLNLLALSF GEQLHIFQVRKNCRFSEVYMESVSEEAPGGSGADVRVGFTVVPGFKIGKTVVQSQVYLTPAGKSPARR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29300		UNE1	unfertilized embryo sac 1, Pla...		Lus10007312 [exp]	0	1
AT1G21090			Cupredoxin superfamily protein...		Lus10018856 [exp]	3.0	0.8449
AT5G43160		QWRF9	QWRF domain containing 9, Fami...		Lus10007759 [exp]	9.9	0.7873
AT2G47500			P-loop nucleoside triphosphate...		Lus10010300 [exp]	13.1	0.8247
AT3G51850		CPK13	calcium-dependent protein kina...		Lus10002482 [exp]	13.5	0.7957
AT4G23740			Leucine-rich repeat protein ki...		Lus10032351 [exp]	17.5	0.8155
AT5G23100			Protein of unknown function, D...		Lus10000863 [exp]	18.0	0.8030
AT5G17850			Sodium/calcium exchanger famil...		Lus10013634 [exp]	18.8	0.8037
AT2G40070			unknown protein		Lus10030402 [exp]	22.1	0.7879
AT1G29300		UNE1	unfertilized embryo sac 1, Pla...		Lus10029259 [exp]	22.3	0.8425
AT5G19160		TBL11	TRICHOME BIREFRINGENCE-LIKE 11...		Lus10034041 [exp]	25.0	0.7776

Compare expression of checked genes

Lus10007312 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.