Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34250 909 / 0 SecY protein transport family protein (.1.2) AT1G29310 909 / 0 SecY protein transport family protein (.1) AT1G78720 896 / 0 SecY protein transport family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029262 [exp] 961 / 0 AT2G34250 908 / 0.0 SecY protein transport family protein (.1.2) Lus10010932 [exp] 955 / 0 AT2G34250 910 / 0.0 SecY protein transport family protein (.1.2) Lus10031399 [exp] 955 / 0 AT2G34250 910 / 0.0 SecY protein transport family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G107900 [exp] 947 / 0 AT2G34250 909 / 0.0 SecY protein transport family protein (.1.2) Potri.001G387600 [exp] 946 / 0 AT2G34250 908 / 0.0 SecY protein transport family protein (.1.2) Potri.011G114900 [exp] 670 / 0 AT1G78720 672 / 0.0 SecY protein transport family protein (.1) Potri.011G114200 [exp] 476 / 1e-167 AT1G78720 474 / 3e-167 SecY protein transport family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10559 [flax] [poplar] Plug_translocon Plug domain of Sec61p PF00344 [flax] [poplar] SecY SecY translocase
Representative CDS sequence Show only first row Show all	>Lus10007313 pacid=23142492 polypeptide=Lus10007313 locus=Lus10007313.g ID=Lus10007313.BGIv1.0 annot-version=v1.0 ATGGGAGGAGGATTTAGAGTTCTGCATCTGGTGAGACCGTTCCTATCGTTCCTACCGGAAGTCCAGAGCGCTGATCGGAAGATCCCGTTCAGGGAGAAGG TGATCTACACCGTTATTTCTCTATTTATCTTCCTAGTCTGCAGTCAGCTCCCGCTCTACGGAATCCACTCGACAACGGGAGCAGATCCTTTCTACTGGAT GCGTGTCATCCTCGCTTCCAACAGGGGGACCGTCATGGAGCTCGGGATCACCCCGATCGTCACATCTGGACTCGTGATGCAGCTCTTGGCTGGATCCAAA ATCATCGAGGTCGACAACAGCGTCCGTGAGGACCGTGCTTTGCTGAATGGGGCACAAAAGTTGTTAGGTATCCTGATTGCTGTAGGTGAAGCGGTTGCTT ATGTGTTATCTGGGATGTATGGAAGCGTTGGTCAGCTGGGCGTTGGGAATGCTATTCTGATCATCATCCAATTGTGCTTTGCTGGAATCATCGTCATCTG TTTGGATGAATTGCTCCAGAAAGGATATGGTCTCGGCTCTGGAATTTCTCTATTCATTGCTACCAACATTTGTGAAAGCATCATCTGGAAGGCATTCAGC CCGACCACAATCAACAGCGGTCGTGGGGCCGAATTCGAGGGTGCAATTATTGCACTGTTCCACCTTCTAATCACGAGGACTGACAAAGTTCGTGCTTTAA GAGAGGCATTCTACCGGCAGAATCTTCCCAATGTTACCAACTTGCTTGCGACTGTGTTGATCTTCCTTATCGTCATCTACTTCCAAGGCTTCCGTGTAGT GTTGCCAGTGAGGTCGAAGAATGCTCGTGGGCAGCAGGGTTCATACCCAATTAAGCTTTTCTACACCTCCAACATGCCCATCATTCTCCAGTCCGCTCTT GTTTCCAACCTCTATTTCATCTCTCAGCTGTTATACCGTAAGTACAGTGGAAACTTCATTGTGAACTTGTTGGGAAAGTGGAAGGAGTCTGAATACTCCG GTGGCCAGTTCATCCCAGTTGGTGGTCTTGCATACTATGTGACTGCTCCCGCTAGCTTGGCAGACATGGCAGCCAACCCATTCCATGCATTGTTCTACCT GATATTTATGCTCGGAGCCTGCGCTCTCTTCTCCAAGACCTGGATCGAGGTCTCTGGATCTTCGGCCCGAGATGTCGCCAAGCAACTGAAGGAGCAACAA ATGGTGATGCCTGGACATCGCGATTCGAACCTACAGAAGGAGCTGAACAGGTACATCCCAACAGCAGCTGCTTTCGGTGGGATCTGCATCGGTGCATTGA CGGTCCTGGCCGATTTCATGGGGGCAATTGGTTCAGGAACAGGAATCCTGCTAGCTGTAACCATTATATACCAGTACTTCGAGACGTTTGAGAAGGAGAA GGCCAGCGAACTTGGGTTCTTCGGCTTCTGA
AA sequence Show only first row Show all	>Lus10007313 pacid=23142492 polypeptide=Lus10007313 locus=Lus10007313.g ID=Lus10007313.BGIv1.0 annot-version=v1.0 MGGGFRVLHLVRPFLSFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSK IIEVDNSVREDRALLNGAQKLLGILIAVGEAVAYVLSGMYGSVGQLGVGNAILIIIQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFS PTTINSGRGAEFEGAIIALFHLLITRTDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSAL VSNLYFISQLLYRKYSGNFIVNLLGKWKESEYSGGQFIPVGGLAYYVTAPASLADMAANPFHALFYLIFMLGACALFSKTWIEVSGSSARDVAKQLKEQQ MVMPGHRDSNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKEKASELGFFGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34250			SecY protein transport family ...		Lus10007313 [exp]	0	1
AT2G34250			SecY protein transport family ...		Lus10029262 [exp]	4.5	0.8171
AT5G35160			Endomembrane protein 70 protei...		Lus10027831 [exp]	6.3	0.8321
AT1G68560		AXY3, TRG1, XYL...	thermoinhibition resistant ger...		Lus10035020 [exp]	7.2	0.7788
AT2G45600			alpha/beta-Hydrolases superfam...		Lus10009308 [exp]	11.0	0.7580
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Lus10011834 [exp]	18.6	0.7710
AT5G35160			Endomembrane protein 70 protei...		Lus10005060 [exp]	20.4	0.8066
AT3G25130			unknown protein		Lus10011835 [exp]	20.7	0.7575
AT5G64660		ATCMPG2	"CYS, MET, PRO, and GLY protei...		Lus10005810 [exp]	25.0	0.7307
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Lus10022766 [exp]	27.1	0.7491
AT3G58050			unknown protein		Lus10017239 [exp]	28.2	0.7660

Compare expression of checked genes

Lus10007313 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.