Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29340 820 / 0 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT5G01830 322 / 5e-100 ARM repeat superfamily protein (.1) AT3G46510 274 / 4e-82 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT3G54850 234 / 1e-67 ATPUB14 plant U-box 14 (.1) AT1G60190 234 / 6e-67 AtPUB19 plant U-box 19, ARM repeat superfamily protein (.1) AT1G23030 228 / 2e-65 PUB11 ARM repeat superfamily protein (.1) AT1G71020 218 / 4e-63 ARM repeat superfamily protein (.1.2) AT2G28830 221 / 5e-61 AtPUB12 PLANT U-BOX 12 (.1) AT5G42340 213 / 9e-60 PUB15 Plant U-Box 15 (.1) AT1G10560 197 / 9e-54 ATPUB18 ARABIDOPSIS THALIANA PLANT U-BOX 18, plant U-box 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029266 [exp] 649 / 0 AT1G29340 430 / 3e-146 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Lus10029267 [exp] 424 / 1e-144 AT1G29340 319 / 1e-104 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Lus10025244 [exp] 375 / 8e-120 AT5G01830 765 / 0.0 ARM repeat superfamily protein (.1) Lus10006090 [exp] 372 / 6e-119 AT5G01830 764 / 0.0 ARM repeat superfamily protein (.1) Lus10007511 [exp] 357 / 7e-113 AT3G46510 397 / 2e-129 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10017444 [exp] 346 / 3e-109 AT3G46510 381 / 2e-123 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10029163 [exp] 285 / 6e-86 AT1G60190 571 / 0.0 plant U-box 19, ARM repeat superfamily protein (.1) Lus10016565 [exp] 263 / 2e-77 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10040834 [exp] 261 / 9e-77 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G071400 [exp] 941 / 0 AT1G29340 888 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Potri.004G061800 [exp] 880 / 0 AT1G29340 833 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Potri.008G071600 [exp] 358 / 3e-113 AT3G46510 345 / 2e-109 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.010G185900 [exp] 356 / 1e-112 AT3G46510 335 / 2e-105 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.016G134000 [exp] 355 / 2e-112 AT5G01830 702 / 0.0 ARM repeat superfamily protein (.1) Potri.006G107600 [exp] 352 / 4e-111 AT5G01830 729 / 0.0 ARM repeat superfamily protein (.1) Potri.012G078900 [exp] 297 / 2e-90 AT1G60190 513 / 3e-174 plant U-box 19, ARM repeat superfamily protein (.1) Potri.015G074200 [exp] 295 / 1e-89 AT1G60190 501 / 2e-169 plant U-box 19, ARM repeat superfamily protein (.1) Potri.009G029600 [exp] 265 / 2e-78 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.001G238500 [exp] 258 / 4e-76 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10007317 pacid=23142448 polypeptide=Lus10007317 locus=Lus10007317.g ID=Lus10007317.BGIv1.0 annot-version=v1.0 ATGGCAACGGCGGCGATATTTTCCTCAATCAGGCGGCGGAGATCCCCATCGCTGGAGGCGTTCCTAGCGCCGGTGGACTTAAACGACATCGCTTTGTTAC AGACTCTGGCGACGGTAGCAAGGGAGCTGGTCAACTGTTTCTCGGGAAAGTCAACCTTCTTCCAGCGGCGGAATTCCCGCTCCTTAATCCGTAAGATCGA AGTCTTTCTCGTACTGCTAGATTACTTGAACGATTCATATGGCGGTTCTGTTTCATCTCTGCCGTCAAACGCCGTCGTTTGCTTGAAGGAGCTTTACTTG GTGTTATACCGCTCGAAAATCCTGCTGGATTACTGCGTCCAGTCGAGTAAGTTATGGCTATTGTTGCAGAACCAGTCGATTTCGGGTCATTTCCATGATT TGAATCAGGAGATTTTGACTTTGCTTGATGTTTTCCCTCTCTGGGAAGTGAAATTGAGCTTGGATGTTAGGGAACAGATTGAGCTGATTCACAGGCAATC CAGGAGGGCTAATTTGTTGATTGATAAGAAGGATGAAACCCTAAGGTTGGAATTTTACTCCTTTCTTGACCGGTTCGAGAAAGGGGAGATTCCGGTTGGG TCTGAATTCAGATGTTTCTTTGTGGAGAGATTAGGGATTCGTGATGCCAAGAGCTGCAGGGATGAGATTGAGTTCTTGGAAGAGCAGATTGTGAGTCACG ATGGAGATGTTGAGCCGACTGCTTCGGTGCTTAATGGATTTGTAGCGATCGTGAGGTATTCGAGGTTCTTGCTGTTCGGGTTTGATGGCTCGAACGATGA GGAGGAATTGCAGATTGGTGGGAGGAGGAGGGGGATGAAGCAGCGGAGGAAGAGGAGAGGGCTGATTACTCGGGAGATTGCGGAGACTTTCGCTACAATT CCGAAGGACTTCTGCTGTCCGATTTCGCTCGATTTGATGCGCGATCCGGTGATCATCTCCACGGGGCAGACTTATGATCGGAGCTCGATTTCAAGATGGA TGGAGGAAGGGCATTGCAGCTGTCCGAAAACCGGGCAGGTGGTTTCGAACACCCGCCTCGTATCGAACAAGGCGTTGCGGAGTTTGATTGTCCAGTGGTG TAATGCTCACGGCATCCCTTACGAGGATCCTTCTCCGGAGAATAACGCAGCATCGTCAGAAGCTGCATCCCCGGAGCTCTCCTCCGCAGCCTTGCCTAGC AAGGCTGCTGTGGAGGCTAACAAGGCGACCTCCGAGTTCCTCGTTCAGCATCTCGCTACCGGATCACAATGTGCCAAGACTTTAGCAGCTCGCGAGATTC GTCTGCTGGCCAAGACGGGGAAGGAGAATCGCGCTTTCATCGCGGAGGCCGGAGCGATCCCTCATCTCCGGGGGTTGTTATCTTCGTTGAATCCTGTTGC TCAGGAGAATTCCGTGACAGCGATGCTGAACTTGTCGATCTACGACAAGAACAAGAGCCGGATTATGGAGGAAGACGGATGTCTGAGATCGATCGTCGAA GTGCTGAGGTTCGGTCTGACAACCGAAGCGAAGGAAAACGCCGCGGCGACTTTGTTTAGCTTGTCGGCGGTTCACGACTATAAGAAGAGGATAGCGAACG AGGGGGGAGCGGTCGAAGCTCTAACCGAGATGCTTAGGTATGGAACACCACGCGGGAAGAAGGACGCAGTGACTGCGTTGTTCAACTTATCGACGCATTC GGAGAATTGCGCGAGGATGATCCAATCGGGGGCGGTGGCAGCATTGGTCGTGGCCCTAGGGAACGACGGGGTGGCAGAGGAAGCCGCCGGCGCGCTGGCA TTGATCCTTCGACAGCCGTTGGGGACTGAAGCCGTCGTTAAGGAGGACGATGCCTTGTCCGGATTGATAACAATGATGAGGTGCGGGACTCCGAGAGGGA AAGAGAATGCGGTAGCGGCATTGCTTGAGCTTTGCAAGTGCGGCGGGGCAGCTGCGACAGAGAGAGTGCTAAAGGCGCCGGCTTTGGCCGGTTTGGTGCA TACCCTTTTGTTTACTGGCACTAAGAGGGCTAGGAGGAAGGCTGCTTCGCTGGCTCGAGTGTTTCAAAGGTGCGAAAATAGGGATGCATTGAGGCTCATA CCGTTCGCTGCATCGCAGGTACAGCAGAACTCCGGTGCGAATCGGGATTCGAGTTTTGTTGGGGATGTATCTGTTCATATGGCAATCTCAGTTCCTGTTC TGTAG
AA sequence Show only first row Show all	>Lus10007317 pacid=23142448 polypeptide=Lus10007317 locus=Lus10007317.g ID=Lus10007317.BGIv1.0 annot-version=v1.0 MATAAIFSSIRRRRSPSLEAFLAPVDLNDIALLQTLATVARELVNCFSGKSTFFQRRNSRSLIRKIEVFLVLLDYLNDSYGGSVSSLPSNAVVCLKELYL VLYRSKILLDYCVQSSKLWLLLQNQSISGHFHDLNQEILTLLDVFPLWEVKLSLDVREQIELIHRQSRRANLLIDKKDETLRLEFYSFLDRFEKGEIPVG SEFRCFFVERLGIRDAKSCRDEIEFLEEQIVSHDGDVEPTASVLNGFVAIVRYSRFLLFGFDGSNDEEELQIGGRRRGMKQRRKRRGLITREIAETFATI PKDFCCPISLDLMRDPVIISTGQTYDRSSISRWMEEGHCSCPKTGQVVSNTRLVSNKALRSLIVQWCNAHGIPYEDPSPENNAASSEAASPELSSAALPS KAAVEANKATSEFLVQHLATGSQCAKTLAAREIRLLAKTGKENRAFIAEAGAIPHLRGLLSSLNPVAQENSVTAMLNLSIYDKNKSRIMEEDGCLRSIVE VLRFGLTTEAKENAAATLFSLSAVHDYKKRIANEGGAVEALTEMLRYGTPRGKKDAVTALFNLSTHSENCARMIQSGAVAALVVALGNDGVAEEAAGALA LILRQPLGTEAVVKEDDALSGLITMMRCGTPRGKENAVAALLELCKCGGAAATERVLKAPALAGLVHTLLFTGTKRARRKAASLARVFQRCENRDALRLI PFAASQVQQNSGANRDSSFVGDVSVHMAISVPVL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29340		ATPUB17, PUB17	ARABIDOPSIS THALIANA PLANT U-B...		Lus10007317 [exp]	0	1
AT1G29340		ATPUB17, PUB17	ARABIDOPSIS THALIANA PLANT U-B...		Lus10029267 [exp]	1.0	0.9093
AT1G29340		ATPUB17, PUB17	ARABIDOPSIS THALIANA PLANT U-B...		Lus10029266 [exp]	1.4	0.8493
AT1G01500			Erythronate-4-phosphate dehydr...		Lus10018819 [exp]	4.9	0.8187
AT1G34300			lectin protein kinase family p...		Lus10013252 [exp]	9.2	0.8364
AT2G33580			Protein kinase superfamily pro...		Lus10008586 [exp]	12.4	0.8491
AT4G32300		SD2-5	S-domain-2 5 (.1)		Lus10043391 [exp]	13.3	0.7857
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Lus10019526 [exp]	13.4	0.8457
AT3G25780		AOC3, AOC2	allene oxide cyclase 3 (.1)		Lus10033535 [exp]	16.2	0.8099
					Lus10018622 [exp]	19.0	0.8153
AT5G15710			Galactose oxidase/kelch repeat...		Lus10031955 [exp]	19.1	0.7700

Compare expression of checked genes

Lus10007317 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.