Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18880 345 / 3e-116 HSF AT-HSFA4A ,HSF A4A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) AT5G45710 311 / 8e-104 HSF RHA1, AT-HSFA4C ROOT HANDEDNESS 1, HEAT SHOCK TRANSCRIPTION FACTOR A4C, winged-helix DNA-binding transcription factor family protein (.1.2) AT1G32330 204 / 7e-61 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT5G16820 204 / 2e-60 HSF ATHSF3, ATHSFA1B, HSF3 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) AT3G02990 197 / 3e-58 HSF ATHSFA1E heat shock transcription factor A1E (.1) AT4G13980 196 / 1e-57 HSF AT-HSFA5 HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1) AT4G17750 195 / 3e-57 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT2G26150 187 / 1e-55 HSF ATHSFA2 heat shock transcription factor A2 (.1.2) AT3G22830 183 / 2e-53 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) AT5G03720 165 / 1e-46 HSF AT-HSFA3 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015237 [exp] 540 / 0 AT4G18880 363 / 9e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Lus10005420 [exp] 520 / 0 AT4G18880 348 / 1e-116 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Lus10029269 [exp] 510 / 0 AT4G18880 281 / 9e-94 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Lus10030956 [exp] 226 / 4e-69 AT1G32330 451 / 1e-155 heat shock transcription factor A1D (.1) Lus10040091 [exp] 226 / 6e-69 AT1G32330 453 / 1e-156 heat shock transcription factor A1D (.1) Lus10016634 [exp] 215 / 1e-64 AT4G13980 446 / 5e-154 HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1) Lus10000312 [exp] 213 / 3e-64 AT1G32330 437 / 1e-150 heat shock transcription factor A1D (.1) Lus10040911 [exp] 211 / 2e-63 AT5G16820 370 / 4e-124 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) Lus10011065 [exp] 211 / 3e-63 AT1G32330 441 / 5e-152 heat shock transcription factor A1D (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G071700 [exp] 488 / 3e-172 AT4G18880 400 / 4e-138 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Potri.004G062300 [exp] 476 / 7e-168 AT4G18880 382 / 1e-130 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Potri.014G141400 [exp] 294 / 8e-96 AT4G18880 251 / 4e-79 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Potri.001G138900 [exp] 219 / 3e-66 AT1G32330 408 / 2e-138 heat shock transcription factor A1D (.1) Potri.001G320900 [exp] 216 / 3e-65 AT4G13980 508 / 3e-178 HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1) Potri.003G095000 [exp] 216 / 4e-65 AT1G32330 375 / 2e-125 heat shock transcription factor A1D (.1) Potri.017G059600 [exp] 209 / 2e-62 AT4G13980 499 / 1e-174 HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1) Potri.013G079800 [exp] 200 / 7e-59 AT5G16820 344 / 1e-113 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) Potri.002G048200 [exp] 182 / 9e-54 AT3G22830 347 / 7e-118 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.005G214800 [exp] 180 / 9e-53 AT3G22830 355 / 4e-121 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00447 [flax] [poplar] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Lus10007318 pacid=23142463 polypeptide=Lus10007318 locus=Lus10007318.g ID=Lus10007318.BGIv1.0 annot-version=v1.0 ATGGATGAAGCACAGGGCAGTTCTAGTTCTCTGCCGCCATTTCTCACAAAGACATATGAAATGGTTGATGATCCTTCCTCTGATTCAATAGTTTCGTGGA GTGCCAGCAATAAAAGCTTCATAGTATGGAGTCCACCGGACTTCTCAAGGGAGTTGCTTCCCAAATTCTTTAAGCACAACAACTTCTCCAGCTTTATCAG ACAGCTCAACACTTATGGATTCAGAAAGGCAGATCCGGAACAGTGGGAGTTCGCAAATGAGGATTTTGTAAGAGGTCAACCGCACCTTATGAAGAACATC CACAGACGGAAACCTGTGCATAGCCATTCGATGCAGAACATTCAAGTGCAGGGATCTGCTAATCCCTTGACTGATGCAGAAAGGCAGAGTTTGAAACACG ACATTGCTAGGCTGAAACACGATAAGGAAGTGCTTGTCCTGGAGTTGCAGAGGAAAGAACAGGAGAGACGAGCGTTTGAGCTGCAAATGCAGGCCCTGAG GGGTAAATTCGAAGAACTCGAAATGCGTCAGAAAACTATTGCTTCTTGCCTTACACAGGCATTGAAGAAACCAGGGCTATCTTTAGATCTCATGCCGCAG TTAGAAGGTCATGAAAGAAAGAGGAGGCTACCTCGAATCAGTTGTTATGATGACCCCATGTTAGAGGACAGCACTCAAATGGAGATGTCTGCTTGTCTGG CTGGTGAAAATACGGATCCGAGTTGCTGTTTAGCCCTTTCGAATTCGGAGAAGGTCGAGCTGCTGGAATCGTCGTTGACATTTTGGGAGAATGTCGTGAA CGATGTTAGTCAAACTACGCCGTTCATCCAGCAAACATATCCGTCCCCGGTTGAGATGGACGAGTGTACCAGCTGCGCAGATAGCCCTGCACTGTCTCTT GTGCAACTCAATATAGACGTCCATCCAAATTCTCCGGAGATCGACATGAACTCCGAACCTAATGTACTTGTGTCTGCAGAGCTCACTAGTCCTTCCACCG AACCGTCACCTGGAGGAACAACTGGATCCGGGGTGAATGATGTGTTCTGGGAGCAATTGTTGACAGAGAATCCTGGATCAGGTGTTGCGGAAGAAGCTGA GTCGGAAAACTCTGATTCGGATGGTAGTCGGAGAAACGACATCATCAAACCTATTGATCACGGAAGAAACTGGTGGAATATAAGGAATGTAAATAGTCTT GCAGGACACATCGGACCTCTTACACCTGCTGGAAGAACTTGA
AA sequence Show only first row Show all	>Lus10007318 pacid=23142463 polypeptide=Lus10007318 locus=Lus10007318.g ID=Lus10007318.BGIv1.0 annot-version=v1.0 MDEAQGSSSSLPPFLTKTYEMVDDPSSDSIVSWSASNKSFIVWSPPDFSRELLPKFFKHNNFSSFIRQLNTYGFRKADPEQWEFANEDFVRGQPHLMKNI HRRKPVHSHSMQNIQVQGSANPLTDAERQSLKHDIARLKHDKEVLVLELQRKEQERRAFELQMQALRGKFEELEMRQKTIASCLTQALKKPGLSLDLMPQ LEGHERKRRLPRISCYDDPMLEDSTQMEMSACLAGENTDPSCCLALSNSEKVELLESSLTFWENVVNDVSQTTPFIQQTYPSPVEMDECTSCADSPALSL VQLNIDVHPNSPEIDMNSEPNVLVSAELTSPSTEPSPGGTTGSGVNDVFWEQLLTENPGSGVAEEAESENSDSDGSRRNDIIKPIDHGRNWWNIRNVNSL AGHIGPLTPAGRT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10007318 [exp]	0	1
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10029268 [exp]	1.0	0.9937
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10029269 [exp]	1.4	0.9900
AT1G11340			S-locus lectin protein kinase ...		Lus10013244 [exp]	1.7	0.9603
AT3G55520			FKBP-like peptidyl-prolyl cis-...		Lus10040280 [exp]	2.0	0.9517
AT4G27740			Yippee family putative zinc-bi...		Lus10023244 [exp]	3.9	0.9384
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Lus10014418 [exp]	5.1	0.9410
AT4G36520			Chaperone DnaJ-domain superfam...		Lus10007394 [exp]	6.0	0.9360
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Lus10023921 [exp]	6.3	0.9473
AT1G11905			B-cell receptor-associated pro...		Lus10000048 [exp]	7.0	0.9484
AT1G03290			unknown protein		Lus10028005 [exp]	7.2	0.9322

Compare expression of checked genes

Lus10007318 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.