Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78700 232 / 7e-74 BZR BEH4 BES1/BZR1 homolog 4 (.1) AT4G18890 206 / 1e-64 BZR BEH3 BES1/BZR1 homolog 3 (.1) AT3G50750 98 / 2e-23 BZR BEH1 BES1/BZR1 homolog 1 (.1) AT1G75080 96 / 3e-22 BZR BZR1 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) AT4G36780 94 / 6e-22 BZR BEH2 BES1/BZR1 homolog 2 (.1) AT1G19350 94 / 2e-21 BZR BZR2, BES1 BRASSINAZOLE-RESISTANT 2, BRI1-EMS-SUPPRESSOR 1, Brassinosteroid signalling positive regulator (BZR1) family protein AT5G45300 60 / 1e-09 BZR BAM8, BMY2 BETA-AMYLASE 8, beta-amylase 2 (.1.2) AT2G45880 49 / 5e-06 BZR BAM7, BMY4 BETA-AMYLASE 4, beta-amylase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029270 [exp] 488 / 5e-174 AT1G78700 311 / 3e-105 BES1/BZR1 homolog 4 (.1) Lus10015238 [exp] 306 / 1e-102 AT1G78700 347 / 3e-119 BES1/BZR1 homolog 4 (.1) Lus10005419 [exp] 302 / 3e-101 AT1G78700 348 / 9e-120 BES1/BZR1 homolog 4 (.1) Lus10026036 [exp] 126 / 2e-33 AT1G75080 303 / 2e-102 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Lus10014327 [exp] 125 / 3e-33 AT1G75080 309 / 1e-104 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Lus10016307 [exp] 94 / 1e-21 AT1G75080 392 / 5e-137 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Lus10010795 [exp] 93 / 4e-21 AT1G75080 332 / 2e-113 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Lus10035679 [exp] 62 / 3e-10 AT5G45300 884 / 0.0 BETA-AMYLASE 8, beta-amylase 2 (.1.2) Lus10014326 [exp] 52 / 1e-07 AT1G75080 207 / 7e-66 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G071800 [exp] 287 / 2e-95 AT1G78700 334 / 2e-114 BES1/BZR1 homolog 4 (.1) Potri.004G062400 [exp] 286 / 7e-95 AT1G78700 337 / 1e-115 BES1/BZR1 homolog 4 (.1) Potri.011G106800 [exp] 252 / 1e-81 AT1G78700 362 / 1e-125 BES1/BZR1 homolog 4 (.1) Potri.003G026600 [exp] 248 / 5e-80 AT1G78700 341 / 4e-117 BES1/BZR1 homolog 4 (.1) Potri.001G386900 [exp] 247 / 7e-80 AT1G78700 340 / 7e-117 BES1/BZR1 homolog 4 (.1) Potri.007G030700 [exp] 119 / 8e-31 AT1G75080 274 / 7e-91 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Potri.005G126400 [exp] 112 / 5e-28 AT1G75080 269 / 1e-88 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Potri.014G041600 [exp] 105 / 8e-26 AT1G75080 349 / 2e-120 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Potri.002G133700 [exp] 103 / 3e-25 AT1G75080 326 / 2e-111 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Potri.016G125700 [exp] 70 / 4e-14 AT1G19350 82 / 1e-18 BRASSINAZOLE-RESISTANT 2, BRI1-EMS-SUPPRESSOR 1, Brassinosteroid signalling positive regulator (BZR1) family protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05687 [flax] [poplar] BES1_N BES1/BZR1 plant transcription factor, N-terminal
Representative CDS sequence Show only first row Show all	>Lus10007319 pacid=23142477 polypeptide=Lus10007319 locus=Lus10007319.g ID=Lus10007319.BGIv1.0 annot-version=v1.0 ATGACGTCCGGGACGAGAATGCCGACGTGGAAGGAGAGGGAGAACAACAAGAGGAGGGAGCGGCGGAGGAGAGCGATCGCCGCGAAGATCTACACCGGGC TAAGGATGTACGGGAACTACAAGCTCCCTAAGCACTGCGATAACAATGAAGTGCTCAAGGCTCTGTGCCAGGAAGCTGGATGGATCGTCGAAGAAGACGG CACTACTTACCGAAAGGGATGTAGACCGGCGCTTGAAAGAATGAACATAATGGGAGGAGGAGGATCAACATCAGCAAGTCCATGCTCTTCATACCAACCA AGTCCAGCATCCTCATCATTCCCAAGTCCCATCTCCTCCCACTACACCACCACCAACGCCGTCAACAACAATAACAACGCCGCTGACGCCAATTCCTTAA TCCCCTGGCTGAAAAACCTCTCTTCAAGCTCATCATCAGCCTCTTCTTCGAAACACAACCATCCCCACAATCTCTACATCCACACAGGCTCCATCAGCGC ACCAGTAACCCCTCCATTAAGCTCCCCAACCGCACAATCTCCCCGCCGAAAGAAGCAAAACGACGTCTGGGGAGATGATCATCATCATCACCCATCTGCT TGTCCTTCATGGGTCGGCCAGAACTATCCTTTCTTGCCGTCATCGTCGATGCCTTCTTCCACCCCTCAGAGCCCCAGTCGCCATCCCGACCCTTCAGCAT GGCTACCGGGTATGCAGAGCGGACCCACGTCTCCCACGTTCAGCCTTGTGGCCCGGAATCCGTTCGGGTCAGGAGCCGGGTCGAGAATGTGGACTCCTGG ACAAAGCGGGACGTGCTCGCCTGCTGTGTTTGATCACACTGCCGATGTTCCAATGGCGGACAGTAGTATGGCTGCGGAGTTTGCGTTTGGGAGTAATTCT TCGTCAGCTGCTGCTAGGCTGGTGAAGCCATGGGAAGGGGAGAGGATTCATGAGGAGTTGATTTCTGATGATCTTGAGCTTACCCTCGGAAGCTCCAAAA CCAGCGGCGGTGATGTTGTTACGGAGAGATGGAATGTTGACGGGTGGAAGAAAGCAAGAATGAGTTCTGAGTGA
AA sequence Show only first row Show all	>Lus10007319 pacid=23142477 polypeptide=Lus10007319 locus=Lus10007319.g ID=Lus10007319.BGIv1.0 annot-version=v1.0 MTSGTRMPTWKERENNKRRERRRRAIAAKIYTGLRMYGNYKLPKHCDNNEVLKALCQEAGWIVEEDGTTYRKGCRPALERMNIMGGGGSTSASPCSSYQP SPASSSFPSPISSHYTTTNAVNNNNNAADANSLIPWLKNLSSSSSSASSSKHNHPHNLYIHTGSISAPVTPPLSSPTAQSPRRKKQNDVWGDDHHHHPSA CPSWVGQNYPFLPSSSMPSSTPQSPSRHPDPSAWLPGMQSGPTSPTFSLVARNPFGSGAGSRMWTPGQSGTCSPAVFDHTADVPMADSSMAAEFAFGSNS SSAAARLVKPWEGERIHEELISDDLELTLGSSKTSGGDVVTERWNVDGWKKARMSSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Lus10007319 [exp]	0	1
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Lus10029270 [exp]	1.0	0.8266
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Lus10003933 [exp]	2.2	0.7656
AT4G31010			RNA-binding CRS1 / YhbY (CRM) ...		Lus10041383 [exp]	2.4	0.7695
AT1G71140			MATE efflux family protein (.1...		Lus10006171 [exp]	3.2	0.7438
AT5G18550	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10002880 [exp]	3.5	0.7970
AT5G57480			P-loop containing nucleoside t...		Lus10006968 [exp]	4.0	0.7688
AT3G57120			Protein kinase superfamily pro...		Lus10016113 [exp]	5.3	0.7532
AT4G00110		GAE3	UDP-D-glucuronate 4-epimerase ...		Lus10009288 [exp]	5.7	0.7499
AT3G15630			unknown protein		Lus10017768 [exp]	6.5	0.7606
AT1G22790			unknown protein		Lus10028733 [exp]	11.7	0.6943

Compare expression of checked genes

Lus10007319 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.