Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18910 276 / 3e-94 ATNLM2, NIP1;2, NLM2 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) AT4G19030 267 / 8e-91 ATNLM1, AT-NLM1, NLM1, NIP1;1 NOD26-LIKE INTRINSIC PROTEIN 1;1, NOD26-like major intrinsic protein 1 (.1) AT5G37820 231 / 6e-77 NIP4;2, NLM5 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) AT5G37810 230 / 1e-76 NIP4;1, NLM4 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) AT1G31885 204 / 6e-66 NIP3;1 NOD26-like intrinsic protein 3;1 (.1) AT2G34390 189 / 2e-60 NIP2;1, NLM4 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 2;1 (.1) AT4G10380 181 / 5e-57 AtNIP5;1, NIP5;1, NLM6, NLM8 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) AT1G80760 179 / 3e-56 NLM7, NIP6;1 NOD26-like intrinsic protein 6;1 (.1) AT3G06100 135 / 1e-39 NIP7;1, NLM8, NLM6 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 7;1 (.1) AT2G29870 117 / 6e-34 Aquaporin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029274 [exp] 358 / 3e-127 AT4G18910 382 / 6e-135 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Lus10035999 [exp] 239 / 3e-80 AT5G37810 343 / 9e-120 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) Lus10041674 [exp] 186 / 4e-60 AT1G80760 283 / 5e-97 NOD26-like intrinsic protein 6;1 (.1) Lus10024066 [exp] 184 / 3e-58 AT1G80760 416 / 2e-147 NOD26-like intrinsic protein 6;1 (.1) Lus10010153 [exp] 180 / 2e-56 AT4G10380 450 / 6e-161 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Lus10033268 [exp] 179 / 6e-56 AT4G10380 449 / 1e-160 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Lus10017358 [exp] 177 / 2e-55 AT4G10380 446 / 2e-159 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Lus10020929 [exp] 167 / 2e-51 AT4G19030 219 / 6e-70 NOD26-LIKE INTRINSIC PROTEIN 1;1, NOD26-like major intrinsic protein 1 (.1) Lus10025744 [exp] 159 / 2e-48 AT5G37820 207 / 6e-66 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G072100 [exp] 328 / 2e-115 AT4G18910 406 / 3e-144 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.004G063000 [exp] 323 / 4e-113 AT4G18910 386 / 4e-136 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.010G112900 [exp] 250 / 2e-84 AT5G37810 332 / 2e-115 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) Potri.017G128200 [exp] 234 / 5e-78 AT5G37820 350 / 3e-122 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) Potri.017G083300 [exp] 191 / 4e-61 AT4G18910 229 / 2e-74 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.001G455000 [exp] 180 / 9e-57 AT4G10380 447 / 7e-160 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Potri.011G146900 [exp] 179 / 2e-56 AT4G10380 450 / 4e-161 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Potri.002G097000 [exp] 179 / 2e-56 AT4G18910 229 / 3e-74 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.001G046800 [exp] 179 / 2e-56 AT1G80760 371 / 1e-129 NOD26-like intrinsic protein 6;1 (.1) Potri.003G180900 [exp] 174 / 3e-54 AT1G80760 370 / 2e-129 NOD26-like intrinsic protein 6;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [flax] [poplar] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Lus10007322 pacid=23142476 polypeptide=Lus10007322 locus=Lus10007322.g ID=Lus10007322.BGIv1.0 annot-version=v1.0 ATGGTTCTCGTTTACTCCCTCGGACACATCTCCGGCGCCCATTTTAACCCCGCCGTCACTCTGGCCTTCGCCACTTGCAAGCGATTCCCCTGGAAAGAAG TTCCGGCGTATATAGCGTGCCAAGTGGCCGGATCGACTATGGCCGGCGGGGACCACTTTACCGGAACTCTTCCGGCGGGGCCTGATATGCAGTCCTTTGT TGTCGAGTTCATCATTACGTTCTACCTTATGTTCGTCATCTCAGGAGTTGCCACTGACAACAGAGCTATTGGTGAACTAGCAGGACTTGCAGTTGGATCG ACCGTGCTCCTTAATGTGATGTTCGCAGGGCCGATTTCAGGGGCGTCGATGAACCCAGCTAGGAGCTTGGGCCCGGCGATAGTGTCACACCAGTATAAAG GGATATGGATATACATGCTGGCTCCCACGCTCGGTGCACAAGGCGGAGCGTGGGTCTACAACTTCATTCGGTACACTGACAAGCCGTTGCGAGAGATCAC CAAGAGTGCTTCCTTCCTCAAGAGCACCGGCCGTTCTTGA
AA sequence Show only first row Show all	>Lus10007322 pacid=23142476 polypeptide=Lus10007322 locus=Lus10007322.g ID=Lus10007322.BGIv1.0 annot-version=v1.0 MVLVYSLGHISGAHFNPAVTLAFATCKRFPWKEVPAYIACQVAGSTMAGGDHFTGTLPAGPDMQSFVVEFIITFYLMFVISGVATDNRAIGELAGLAVGS TVLLNVMFAGPISGASMNPARSLGPAIVSHQYKGIWIYMLAPTLGAQGGAWVYNFIRYTDKPLREITKSASFLKSTGRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18910		ATNLM2, NIP1;2,...	NOD26-LIKE INTRINSIC PROTEIN 2...		Lus10007322 [exp]	0	1
AT1G03590			Protein phosphatase 2C family ...		Lus10031631 [exp]	6.8	0.7968
AT1G04280			P-loop containing nucleoside t...		Lus10022217 [exp]	7.1	0.7643
AT2G35035		URED	urease accessory protein D (.1...		Lus10007861 [exp]	11.4	0.7817
AT5G25360			unknown protein		Lus10030101 [exp]	11.5	0.7851
AT1G04280			P-loop containing nucleoside t...		Lus10021226 [exp]	23.0	0.7917
AT5G39510		ZIG1, SGR4, ATV...	SHOOT GRAVITROPSIM 4, VESICLE ...		Lus10000565 [exp]	25.5	0.7478
AT1G22450		ATCOX6B2, COX6B	CYTOCHROME C OXIDASE 6B2, cyto...		Lus10010345 [exp]	26.9	0.7717
AT4G18060			SH3 domain-containing protein ...		Lus10011975 [exp]	26.9	0.7267
AT1G68910		WIT2	WPP domain-interacting protein...		Lus10013053 [exp]	28.7	0.7794
AT5G08160		ATPK3	serine/threonine protein kinas...		Lus10007963 [exp]	30.4	0.7578

Compare expression of checked genes

Lus10007322 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.