Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29760 341 / 8e-114 Putative adipose-regulatory protein (Seipin) (.1) AT2G34380 312 / 5e-103 Putative adipose-regulatory protein (Seipin) (.1) AT5G16460 147 / 5e-41 Putative adipose-regulatory protein (Seipin) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033273 [exp] 224 / 1e-69 AT1G29760 228 / 5e-69 Putative adipose-regulatory protein (Seipin) (.1) Lus10034735 [exp] 213 / 2e-65 AT1G29760 231 / 3e-70 Putative adipose-regulatory protein (Seipin) (.1) Lus10026836 [exp] 129 / 7e-34 AT5G16460 282 / 3e-92 Putative adipose-regulatory protein (Seipin) (.1) Lus10020213 [exp] 127 / 4e-33 AT5G16460 285 / 4e-93 Putative adipose-regulatory protein (Seipin) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G072200 [exp] 444 / 3e-154 AT1G29760 382 / 4e-127 Putative adipose-regulatory protein (Seipin) (.1) Potri.013G085850 [exp] 154 / 5e-43 AT5G16460 269 / 5e-87 Putative adipose-regulatory protein (Seipin) (.1) Potri.003G025975 [exp] 50 / 8e-08 AT1G29760 60 / 5e-12 Putative adipose-regulatory protein (Seipin) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06775 [flax] [poplar] Seipin Putative adipose-regulatory protein (Seipin)
Representative CDS sequence Show only first row Show all	>Lus10007323 pacid=23142487 polypeptide=Lus10007323 locus=Lus10007323.g ID=Lus10007323.BGIv1.0 annot-version=v1.0 ATGATTAAGGCAATTGGATTCCAGCTCAATTTGTTAATTAATTTCATTTCCTTCCCATTATGGGCTCTGTATTATTCCTACATGTTGGTCACCGATCCAT TTGGCTTCACAAGGCGTGGGAAGATGTTTCTGATACGACGGTTGCTCTCTATCTGGAACTTGACTGCTGGATTTTTAGGTTCGTGGGTGAAGGATTGGTT GAAGGAGCATCAGACGAAGTGGAAGCTCTTGCTGGGGATTGGATGGGGTTTGCTTCTTTGTTGCTACATCTGTGTTATTCTGTTTGGCTTATTGATCTTG GCGATTATGGCCAGTGGAGTTCTGATGAAGTATCTTGTGGAGGAGCCATTGCAGATAAGTGAAGCTTTGAATTTTGATTATACTCGAAGCAAGCCGACTG CTTATGTTCCTATTGTGTCCTGTGCTGGTGTTGATTCTGGTGCTGAGTATGGTGATAAGGTTGCGGAGATCCGGAGCTTCAAGCAGAGGCTCATACCTCC CAAACATAAAGTGCAAGCTAGCTTGGTGATGACTTTGCCTGAATCCGAGTATAACAGAAATCTTGGGATGTTTCAGGTACGGCTGGACATACTCTCTGCC GATGGAAAAATCCTGGTGAGCAAGAGCCATCCATGCATGTTGAAGTTCAAAAGCGAGCCAATCCGGTTACTACTGACCATGCTAAAGGTCGTGCCTCTTG TCGCTGGATACATATCTGAATCCCAAGCTCTACGATTGAGGATCAGAGGTTTCACCGAGGGCGATGTGCCAACTTCATGCATCAGGGTAATGATCGAACA GCGAGCCGAATTCCATCCTGGCGGTGGCATACCGGAACTATACGACGCCTCCCTGACGCTGGAATCACATCTTCCTTTCTTTAGAAGGATCGTATGGAGT TGGAAGAAGACAATCTTCATATGGATTAGCTTGATAACCTTCATGACGGAGTTGCTCGTTGCTCTAATATGTTGTAGACCTGTAATCCTTCCAAGACTAA GGCCAATAGATGCTTCTCTTCCTGATGTAGTTCCTAGTCCTCTTCTAAACAATCTCGGCAGACAAAGGTGA
AA sequence Show only first row Show all	>Lus10007323 pacid=23142487 polypeptide=Lus10007323 locus=Lus10007323.g ID=Lus10007323.BGIv1.0 annot-version=v1.0 MIKAIGFQLNLLINFISFPLWALYYSYMLVTDPFGFTRRGKMFLIRRLLSIWNLTAGFLGSWVKDWLKEHQTKWKLLLGIGWGLLLCCYICVILFGLLIL AIMASGVLMKYLVEEPLQISEALNFDYTRSKPTAYVPIVSCAGVDSGAEYGDKVAEIRSFKQRLIPPKHKVQASLVMTLPESEYNRNLGMFQVRLDILSA DGKILVSKSHPCMLKFKSEPIRLLLTMLKVVPLVAGYISESQALRLRIRGFTEGDVPTSCIRVMIEQRAEFHPGGGIPELYDASLTLESHLPFFRRIVWS WKKTIFIWISLITFMTELLVALICCRPVILPRLRPIDASLPDVVPSPLLNNLGRQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29760			Putative adipose-regulatory pr...		Lus10007323 [exp]	0	1
AT3G59350			Protein kinase superfamily pro...		Lus10025498 [exp]	2.0	0.8617
AT3G62220			Protein kinase superfamily pro...		Lus10004524 [exp]	2.8	0.8253
AT1G15060			Uncharacterised conserved prot...		Lus10043481 [exp]	2.8	0.8159
AT5G45360			F-box family protein (.1)		Lus10035689 [exp]	4.9	0.8136
AT5G45360			F-box family protein (.1)		Lus10037278 [exp]	5.5	0.7681
AT5G10290			leucine-rich repeat transmembr...		Lus10023146 [exp]	8.9	0.7866
AT5G53340			Galactosyltransferase family p...		Lus10038830 [exp]	11.2	0.7796
AT1G65320			Cystathionine beta-synthase (C...		Lus10037535 [exp]	11.8	0.8139
AT1G32250			Calcium-binding EF-hand family...		Lus10035383 [exp]	11.8	0.7644
AT5G05987		PRA1.A2	prenylated RAB acceptor 1.A2 (...		Lus10001021 [exp]	13.5	0.8178

Compare expression of checked genes

Lus10007323 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.