Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18960 179 / 2e-56 MADS AG AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) AT3G58780 138 / 2e-40 MADS AGL1, SHP1 SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3) AT2G42830 130 / 2e-37 MADS AGL5, SHP2 SHATTERPROOF 2, AGAMOUS-like 5, K-box region and MADS-box transcription factor family protein (.1.2) AT4G09960 108 / 4e-29 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT1G69120 56 / 4e-09 MADS AGL7, AP1 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) AT1G26310 52 / 6e-08 MADS CAL1, AGL10, CAL CAULIFLOWER, AGAMOUS-like 10, K-box region and MADS-box transcription factor family protein (.1) AT5G60910 50 / 2e-07 MADS FUL, AGL8 FRUITFULL, AGAMOUS-like 8 (.1.2) AT2G45660 43 / 4e-05 MADS ATSOC1, SOC1, AGL20 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) AT4G22950 43 / 5e-05 MADS AGL19 AGAMOUS-like 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029275 [exp] 186 / 1e-58 AT3G58780 220 / 2e-71 SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10005302 [exp] 113 / 2e-30 AT4G09960 330 / 2e-115 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10008264 [exp] 110 / 5e-29 AT4G09960 328 / 3e-114 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10009481 [exp] 103 / 3e-26 AT4G09960 274 / 1e-92 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10028215 [exp] 48 / 3e-07 AT3G57230 164 / 4e-52 AGAMOUS-like 16 (.1.2) Lus10034662 [exp] 49 / 6e-07 AT5G60910 284 / 3e-97 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10017870 [exp] 48 / 1e-06 AT1G69120 212 / 3e-69 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10006715 [exp] 48 / 1e-06 AT4G22950 223 / 1e-73 AGAMOUS-like 19 (.1) Lus10017871 [exp] 47 / 2e-06 AT1G69120 264 / 2e-90 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G064300 [exp] 202 / 2e-65 AT4G18960 313 / 8e-109 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.011G075800 [exp] 189 / 3e-60 AT4G18960 325 / 2e-113 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.013G104900 [exp] 113 / 5e-31 AT4G09960 330 / 3e-116 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.019G077200 [exp] 91 / 3e-22 AT4G09960 274 / 5e-94 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.012G062300 [exp] 48 / 1e-06 AT5G60910 288 / 5e-99 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.004G115400 [exp] 46 / 7e-06 AT5G60910 230 / 7e-76 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.015G098400 [exp] 45 / 8e-06 AT4G22950 136 / 4e-40 AGAMOUS-like 19 (.1) Potri.014G074100 [exp] 45 / 1e-05 AT2G45650 311 / 5e-108 AGAMOUS-like 6 (.1) Potri.001G284301 [exp] 45 / 2e-05 AT4G37940 272 / 7e-93 AGAMOUS-like 21 (.1) Potri.001G284600 [exp] 45 / 2e-05 AT4G37940 272 / 7e-93 AGAMOUS-like 21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01486 [flax] [poplar] K-box K-box region
Representative CDS sequence Show only first row Show all	>Lus10007324 pacid=23142493 polypeptide=Lus10007324 locus=Lus10007324.g ID=Lus10007324.BGIv1.0 annot-version=v1.0 ATGGGTGCAGCACCAACTGCATGGAAGGCATTGATCAATGCTAGTTGTGATTCTTTCTTAAAGGTTAAAGACACAATAGAGAGGTACAAGAAAGCCAATT CAGACTCTACAAACACTGGATCTGTTGCTGAAGCAAATGCTCAGTACTATCAGGAGGAAGCAGCAAAGCTGAGGCAGAAAATTGGGAATCTGCTGAATAC AAACAGGAAACTTGCTATGTTTGTCAACCATAACAACAACGACGGTGGCGGTGGGGGATCTTCTTCTAGACATATGCCTGGTGAATCACTAGGAGGGCTC GGTCCCAAGGATCTCAAGAACTTGGAGAGCAAACTTGAGAAAGGAATCAGCAGGATCAGATCCAAAAAGAATGAACTGCTGTTTTCGGAGATAGAGTATA TGCAGAAGAGGGAAGTTGATCTGCACAACAACAACCAGCTTCTTCGTGCAAAGATAGCTGATAATGAGAGGAAGCAGCAGAACATGAGCTTGATGCCAGG AGGAGGAGGAGGTGGTGGAGGGAGTACTAGCTACGAGATTGTGCACCCTCATCAGCATCAGCAATTTGATTCCCGAAACTACTTCCAAGTGAATGCTTTA CAACCCACCAACCATTACCCTCAACAAGACCATATGTCACTTCAGTTGGGGTATAAAGATTAA
AA sequence Show only first row Show all	>Lus10007324 pacid=23142493 polypeptide=Lus10007324 locus=Lus10007324.g ID=Lus10007324.BGIv1.0 annot-version=v1.0 MGAAPTAWKALINASCDSFLKVKDTIERYKKANSDSTNTGSVAEANAQYYQEEAAKLRQKIGNLLNTNRKLAMFVNHNNNDGGGGGSSSRHMPGESLGGL GPKDLKNLESKLEKGISRIRSKKNELLFSEIEYMQKREVDLHNNNQLLRAKIADNERKQQNMSLMPGGGGGGGGSTSYEIVHPHQHQQFDSRNYFQVNAL QPTNHYPQQDHMSLQLGYKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18960	MADS	AG	AGAMOUS, K-box region and MADS...		Lus10007324 [exp]	0	1
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Lus10003125 [exp]	6.2	0.9905
AT3G58780	MADS	AGL1, SHP1	SHATTERPROOF 1, AGAMOUS-like 1...		Lus10029275 [exp]	8.2	0.9904
					Lus10032910 [exp]	9.3	0.8272
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10026679 [exp]	10.7	0.9903
AT3G19300			Protein kinase superfamily pro...		Lus10018096 [exp]	12.3	0.9903
					Lus10016887 [exp]	13.8	0.9903
AT5G19600		SULTR3;5	sulfate transporter 3;5 (.1)		Lus10017726 [exp]	15.1	0.9903
AT3G51590		LTP12	lipid transfer protein 12 (.1)		Lus10004067 [exp]	16.3	0.9903
AT1G17930			Aminotransferase-like, plant m...		Lus10005482 [exp]	17.4	0.9903
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10022473 [exp]	18.5	0.9903

Compare expression of checked genes

Lus10007324 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.