Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10520 232 / 7e-75 AtPol{lambda} DNA polymerase {lambda}, DNA polymerase lambda (POLL) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030656 [exp] 250 / 5e-82 AT1G10520 744 / 0.0 DNA polymerase {lambda}, DNA polymerase lambda (POLL) (.1) Lus10030831 [exp] 241 / 9e-79 AT1G10520 704 / 0.0 DNA polymerase {lambda}, DNA polymerase lambda (POLL) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G094800 [exp] 226 / 1e-72 AT1G10520 724 / 0.0 DNA polymerase {lambda}, DNA polymerase lambda (POLL) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007325 pacid=23166246 polypeptide=Lus10007325 locus=Lus10007325.g ID=Lus10007325.BGIv1.0 annot-version=v1.0 ATGAAACGACTCGAGGACATGGAGGTCTTGAGAGAATATTTAGTTTTCAGCACCCACAGCGAGCAGGGTACTGATTCCGACGTTGACACATATTTCGGCC TTTGTACATGTCCTGGACAAGAACTGCGACGCCGGATAGATTTCAAGGTATGTCCGAGGGACATATATGCTTTCGGTCTCATAGCATGGACTGGGAATGA TACACTCAACAGAAGGTTGAGGCTGCTAGCAGAGTTGAAAGGTTTCCGGCTCGATGACACCGGTCTATTCCCGGCTACTCACTCTTCAAGTGGCAAGCGG GGTTCGAGGGCGAGTGTGAGCCTGAAACTGCAGACGGAGAAGGAAGTGTTTGAGTTCTTGGGGTTTCCATGGCTTGAACCTCATGAAAGGAACTTGTGTT TGCAACCGGTACATTGTGCAAGAGCAGACCTTGACAAGCTTTCCACGTTGTGGCGCCCATGA
AA sequence Show only first row Show all	>Lus10007325 pacid=23166246 polypeptide=Lus10007325 locus=Lus10007325.g ID=Lus10007325.BGIv1.0 annot-version=v1.0 MKRLEDMEVLREYLVFSTHSEQGTDSDVDTYFGLCTCPGQELRRRIDFKVCPRDIYAFGLIAWTGNDTLNRRLRLLAELKGFRLDDTGLFPATHSSSGKR GSRASVSLKLQTEKEVFEFLGFPWLEPHERNLCLQPVHCARADLDKLSTLWRP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10520		AtPol{lambda}	DNA polymerase {lambda}, DNA p...		Lus10007325 [exp]	0	1
					Lus10012774 [exp]	3.3	0.9051
					Lus10010117 [exp]	5.7	0.7685
AT3G52620			unknown protein		Lus10022704 [exp]	6.7	0.6556
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025408 [exp]	6.9	0.7685
AT2G25010			Aminotransferase-like, plant m...		Lus10008761 [exp]	8.0	0.7685
					Lus10005187 [exp]	8.9	0.7685
					Lus10002152 [exp]	9.8	0.7685
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10040338 [exp]	10.6	0.7685
					Lus10039750 [exp]	11.3	0.7676
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10027430 [exp]	13.4	0.7376

Compare expression of checked genes

Lus10007325 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.