Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29860 91 / 1e-21 WRKY ATWRKY71, WRKY71 WRKY DNA-binding protein 71 (.1) AT4G18170 81 / 2e-17 WRKY ATWRKY28, WRKY28 WRKY DNA-binding protein 28 (.1) AT2G47260 75 / 3e-15 WRKY ATWRKY23, WRKY23 WRKY DNA-binding protein 23 (.1) AT5G46350 72 / 1e-14 WRKY ATWRKY8, WRKY8 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 8, WRKY DNA-binding protein 8 (.1) AT3G62340 70 / 6e-14 WRKY ATWRKY68, WRKY68 WRKY family transcription factor (.1) AT5G49520 70 / 2e-13 WRKY ATWRKY48, WRKY48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) AT1G69310 66 / 3e-12 WRKY ATWRKY57, WRKY57 WRKY DNA-binding protein 57 (.1.2) AT5G07100 62 / 4e-11 WRKY WRKY26 WRKY DNA-binding protein 26 (.1.2) AT4G39410 61 / 2e-10 WRKY ATWRKY13, WRKY13 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 13, WRKY DNA-binding protein 13 (.1) AT5G64810 59 / 3e-10 WRKY ATWRKY51, WRKY51 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 51, WRKY DNA-binding protein 51 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004537 [exp] 86 / 1e-19 AT1G29860 188 / 1e-58 WRKY DNA-binding protein 71 (.1) Lus10004612 [exp] 84 / 9e-19 AT1G29860 188 / 3e-58 WRKY DNA-binding protein 71 (.1) Lus10037785 [exp] 73 / 2e-14 AT5G49520 179 / 4e-53 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10037094 [exp] 71 / 1e-13 AT1G69310 209 / 1e-65 WRKY DNA-binding protein 57 (.1.2) Lus10017067 [exp] 69 / 3e-13 AT5G49520 184 / 2e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10036891 [exp] 69 / 3e-13 AT1G69310 220 / 5e-70 WRKY DNA-binding protein 57 (.1.2) Lus10036800 [exp] 61 / 2e-10 AT2G03340 405 / 4e-138 WRKY DNA-binding protein 3 (.1) Lus10000173 [exp] 61 / 2e-10 AT2G03340 366 / 2e-124 WRKY DNA-binding protein 3 (.1) Lus10001265 [exp] 61 / 3e-10 AT2G38470 394 / 2e-132 WRKY DNA-binding protein 33 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G203200 [exp] 121 / 2e-32 AT4G18170 187 / 3e-57 WRKY DNA-binding protein 28 (.1) Potri.002G059100 [exp] 115 / 2e-30 AT4G18170 176 / 1e-52 WRKY DNA-binding protein 28 (.1) Potri.001G352400 [exp] 104 / 4e-26 AT1G29860 184 / 1e-56 WRKY DNA-binding protein 71 (.1) Potri.011G079300 [exp] 99 / 2e-24 AT1G29860 186 / 2e-57 WRKY DNA-binding protein 71 (.1) Potri.014G118200 [exp] 72 / 1e-14 AT2G47260 190 / 5e-58 WRKY DNA-binding protein 23 (.1) Potri.002G193000 [exp] 72 / 2e-14 AT2G47260 185 / 3e-56 WRKY DNA-binding protein 23 (.1) Potri.010G147700 [exp] 72 / 3e-14 AT5G49520 182 / 8e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Potri.008G103300 [exp] 70 / 1e-13 AT5G49520 170 / 3e-49 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Potri.008G094000 [exp] 67 / 6e-13 AT1G69310 213 / 3e-68 WRKY DNA-binding protein 57 (.1.2) Potri.010G160100 [exp] 67 / 8e-13 AT1G69310 208 / 4e-66 WRKY DNA-binding protein 57 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10007326 pacid=23166223 polypeptide=Lus10007326 locus=Lus10007326.g ID=Lus10007326.BGIv1.0 annot-version=v1.0 ATGATCACTACTCCTCCTCCTGATTATAGTAATTATAATGGTCGTATGACCAGCACCAGCAGCTTCGCAACTACTACAACAACAACAACTATTAGTACTC CTGGAGGCGGAGGAGATCACTATTGTGGATCCTCCAATAACATCATTCTACCAGCTGCTGGAAACGGCGGCGGCAGCCCGTCAAGCAGTACTCCAAACTC TTCCATCTCCTCCTCCTCCAACGACGCCGCCGCAGCCCACAAGATCATCACCAAGAAGGAGGAAAACAAGGATAACTATCAGTCATGTGAAAATCATGAT GATGATGACGATGATGGCAAGTCCAGAAAAGGGAGCTACTACCGATGCACGAGCCAGAAATGCAGAGTGAAGAAGAGGATAGAAAGGTCATTCCAAGACC CTTCAACTGTCATAACTACCTATGAAGGTCAGCACAACCACCACTCTCCGGCCACTCTCCGTGGCAATGCCGCGGCTGCCGCCTTCTTCTCCACCAACCA CCACCACCACCTCCTCTCCTCCTCGTCGCCGTCCAATATCCCACCGGACCTCCTAACCCACCACCTTACACCAAACTTTATGACCACCATGAACCACCAC CACCAGTCCTCCACAGCCCTAAATATTGATCCCACAAATGATCCTAGCCACCCTATTAGTACTAATGATCAGGATGATCATAGTCCCATGTTCCACACCA TGGGCCAACACCAACAAAACCAACAAGTCCATGTTCCTGATTACGGGCTGTTGCAAGACTTAGTCCCTTCCTTTCTCCACAACAAACAACATCACCAACC ATGA
AA sequence Show only first row Show all	>Lus10007326 pacid=23166223 polypeptide=Lus10007326 locus=Lus10007326.g ID=Lus10007326.BGIv1.0 annot-version=v1.0 MITTPPPDYSNYNGRMTSTSSFATTTTTTTISTPGGGGDHYCGSSNNIILPAAGNGGGSPSSSTPNSSISSSSNDAAAAHKIITKKEENKDNYQSCENHD DDDDDGKSRKGSYYRCTSQKCRVKKRIERSFQDPSTVITTYEGQHNHHSPATLRGNAAAAAFFSTNHHHHLLSSSSPSNIPPDLLTHHLTPNFMTTMNHH HQSSTALNIDPTNDPSHPISTNDQDDHSPMFHTMGQHQQNQQVHVPDYGLLQDLVPSFLHNKQHHQP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29860	WRKY	ATWRKY71, WRKY7...	WRKY DNA-binding protein 71 (....		Lus10007326 [exp]	0	1
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10030188 [exp]	5.7	0.8405
AT1G77100			Peroxidase superfamily protein...		Lus10028631 [exp]	6.3	0.8561
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10041667 [exp]	8.0	0.8465
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10031810 [exp]	15.1	0.8773
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10004906 [exp]	15.9	0.8484
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10013327 [exp]	24.0	0.8361
AT2G38870			Serine protease inhibitor, pot...		Lus10024870 [exp]	31.9	0.8395
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Lus10013774 [exp]	42.4	0.8325
AT5G39110			RmlC-like cupins superfamily p...		Lus10035293 [exp]	66.4	0.7822
AT1G14550			Peroxidase superfamily protein...		Lus10009899 [exp]	66.4	0.8004

Compare expression of checked genes

Lus10007326 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.