Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06490 1442 / 0 CalS7, ATGSL7, ATGSL07 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) AT3G59100 1348 / 0 ATGSL11 glucan synthase-like 11 (.1) AT1G05570 1142 / 0 ATGSL6, ATGSL06, GSL6, CALS1 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) AT5G13000 1134 / 0 CALS3, ATGSL12 callose synthase 3, glucan synthase-like 12 (.1.2) AT2G31960 1123 / 0 ATGSL3, ATGSL03 glucan synthase-like 3 (.1.2) AT2G13680 1119 / 0 GLS2, ATGSL02, CALS5 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) AT3G14570 1058 / 0 ATGSL4, ATGSL04 glucan synthase-like 4 (.1.2) AT5G36870 1027 / 0 ATGSL9, ATGSL09 glucan synthase-like 9 (.1) AT2G36850 981 / 0 CHOR, ATGSL8, ATGSL08 CHORUS, glucan synthase-like 8 (.1) AT3G07160 950 / 0 CALS9, ATGSL10 glucan synthase-like 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020750 [exp] 1637 / 0 AT1G06490 2003 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Lus10001424 [exp] 1605 / 0 AT1G06490 2926 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Lus10001056 [exp] 1603 / 0 AT1G06490 1596 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Lus10003920 [exp] 1137 / 0 AT1G05570 3231 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10013744 [exp] 1132 / 0 AT1G05570 2981 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10039199 [exp] 1132 / 0 AT5G13000 3524 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Lus10037469 [exp] 1128 / 0 AT1G05570 3143 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10033483 [exp] 1109 / 0 AT2G13680 1447 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10020893 [exp] 1070 / 0 AT2G13680 3037 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G058700 [exp] 1447 / 0 AT1G06490 2961 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Potri.005G203500 [exp] 1442 / 0 AT1G06490 2914 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Potri.001G230000 [exp] 1151 / 0 AT5G13000 3157 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.001G012200 [exp] 1140 / 0 AT5G13000 3492 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.003G214200 [exp] 1132 / 0 AT5G13000 3363 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.005G058300 [exp] 1121 / 0 AT2G13680 3190 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Potri.011G095100 [exp] 1070 / 0 AT3G14570 2863 / 0.0 glucan synthase-like 4 (.1.2) Potri.015G089300 [exp] 994 / 0 AT2G36850 3066 / 0.0 CHORUS, glucan synthase-like 8 (.1) Potri.001G011900 [exp] 967 / 0 AT3G07160 2981 / 0.0 glucan synthase-like 10 (.1) Potri.013G131300 [exp] 931 / 0 AT4G03550 2752 / 0.0 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0111 [flax] [poplar] GT-C PF02364 [flax] [poplar] Glucan_synthase 1,3-beta-glucan synthase component
Representative CDS sequence Show only first row Show all	>Lus10007327 pacid=23166225 polypeptide=Lus10007327 locus=Lus10007327.g ID=Lus10007327.BGIv1.0 annot-version=v1.0 ATGGCGAGCACCAGTGGCACCAAGAGCGACCACCACCTCCCGAGGTCGCTCTCCCGTGCTTCCACCATAATGGTGGATTTGCGCGATGGCGACGCTCCGG TGATCGACAGTGAGGTCGTTCCGTCTTCGTTGGCTTCTATTGCTCCGATTCTCCGTGTTGCTAACGAGATTCAGGATGATAATCCTAGAGTCGCCTATCT ATGTCGGTTCCACGCATTTGAGAAAGCTCATAAGATGGATCCAACATCAAGTGGACGTGGAGTCCGCCAGTTCAAGACTTATCTGCTTCATAGACTTGAG AGGGAAGAAAGTGAAACAGAACCTCGTCTTGCGAGGACTGATCCTAGGGAAATACAATTGTACTACCAGAAGTTTTATGAGGAAAATATAAGAGATGGGC AGTATACAAAAAAGCCGTATGGTTTGCTTCTAGCACCATATTCTTTCTTATTCACTATAATCCTGGAGGAGATGGGTAAAATTCTTCAGATTGCATCAGT ATTGTATGATGTGCTGAGAACAGTGGTTCCTGAATCCAGAGTGGAAGAAGAGGTTAGCTTCCTAAATGTTTTGACTCCTTATTACAAGGAAGATGTCCTT TACTCAGAAGAAGAGCTTAATCATGAAAATGAAGATGGCATAACAATTCTGTTCTATCTTCAAACAATATATCGAGATGAATGGAGAAATTTTGAGGAAC GGATAGCTGGTTCACCCCTGAAGGACAAGGCAGAGCTTACTCGTCACTGGGTATCCTACAGAGCACAGACACTCGCAAGAACAGTTAGGGGGATGATGTA CTACAGACGGGCTGTTGAACTCCAGTACTTGCTTGAATTTGCAGGAGAGAATGCTATTATTAATGGCCTCCCCAGCACAGAGCTAAGCAGTGAGGACAGG GCTCTATCCGATCGTGCACAGGCTGTAGCTGATCTGAAGTTCACCTATGTGGTTTCATGTCAGATTTATGGTGCTCAAAAGAAGTCCAGTGATGCCCGAG ACCGAAGCTGTTACAACAACATTCTCAATCTCATGTTAAAGTACCCATCACTACGTGTTGCTTACATCGATGAAAGAGAGGAGACGGTGAACGGAAAACA ACAGAAAGTTTATTATTCAGTGCTTGTTAAAGGGGGTGATAAGTTGGATGAGGAAATTTACAGAATAAAGCTTCCTGGGCCACCAACAGAAATAGGAGAA GGCAAACCTGAAAATCAGAACCACGCAATTATTTTCACTCGTGGAGAGGCTCTGCAGTCCATAGACATGAATCAGGATAACTACTTTGAAGAAGCCTTCA AAATGAGAAATGTATTGGACGAATTCGTAACACCTCGCCGTGGGTCACGCAAGCCCACAATTCTTGGCCTGAGGGAGCATATTTTTACTGGAAGTGTTTC ATCACTTGCCTGGTTTATGTCCAACCAAGAAACAAGCTTCGTCACCATTGGCCAACGAATTTTGGCCAACCCTTTAAGGGTACGCTTCCATTATGGTCAT CCTGATATATTTGACCGGCTCTTCCATATAACGAGGGGTGGCATCAGCAAAGCCTCCAAAATCATTAACTTGAGTGAGGATGTGTTTGCAGGATTCAACT CTACATCACGTGGTGGATATATCACGCATCATGAATATATACAAGTGGGCAAAGGACGTGATGTGGGGATGAATCAGATATCTCTTTTCGAAGCAAAGGT TGCAAATGGAAATGGAGAGCAGACTCTGAGTCGTGACATTTATCGTCTTGGGCGCCGATTTGACTTCTACCGAATGCTGTCTTTCTATTTTACGACAATT GGTTTTTATTTCAGCAGCATGATAACTGTGCTCACAGCATATGTATTCTTGTATGGACGCTTGTACATGGTTTTGAGCGGAGTAGAAGCTGCGATCATGA CAAATCCAATCGTACGTCAAACCAAGGCACTTGAACAAGCTTTGGCCACTCAATCAGTGTTTCAACTAGGCTTATTGCTAGTCATGCCAATGGTTATGGA AATTGGGTTGGAGAAAGGATTTCGCTCTGCCTTGGGTGATTTCATCATAATGCAGCTACAGTTAGCTTCAGTTTTCTTCACGTTTCAGCTTGGAACCAAA TCTCACTACTACGGGAAGACAATTTTGCACGGCGGTTCAAAATACCGGGCCACTGGCCGTGGGTTTGTCGTCTTCCATGCAAAGTTTGCGGAAAACTACA GGCTACACTCGAGGAGCCACTTCGTCAAGGGACTGGAGTTGATGATGCTGTTGGTGATATACGGTGTATACGGGGAATCGTATCGCAGTTCGAATCTGTT CTTCTTCATCTCATTCTCCATGTGGTTCCTCGTTTGTTCCTGGCTGTTTGCTCCCTTTGTGTTCAACCCGTCAGGCTTCGACTGGCAAAAAACAGTGGAT GATTGGACTGATTGGAAGCATTGGATGGGTAACCGTGGCGGAATTGGAATTCCGCCCGAGAAAAGCTGGGAGTCATGGTGGGATGGTGAACAAGAGCATC TCAGATACACGAACCTTCGGGGCCGAATTATGGAGATATTCCTTGCTAGCCGCTTCTTTCTCTACCAGTATGGCATCGTGTACCACCTCGACATAGCTCA CCCCCTCAAAAGTCTGTTGGTTTATGGACTTTCATGGGTGGTCATGATCACTGCTCTCCTAGTCTTCAAGATGGTGTCAATGGGCAGACGGAAATTCGGA ACAGATTTCCAGCTAATGTTCAGAATCCTCAAGGCACTTCTATTCCTGGGATTCTTGTCGGTCTTGACTGTATTGTTCGTCGTTTGCAACCTAACGATAT CAGACCTTTTTGTTTCAACCCTCGCCTTCATTCCCACCGGCTGGGCTCTTCTTCTCATTGGTCAAGCATGGAGGGGAATGTTCAAGGGGATAGGGCTATG GGATTCAATCAAGGAGTTAGGGAGAGCCTATGAATACATAATGGGAATACTGATCTTCACCCCGATAGCGGTACTGTCTTGGTTCCCGTTCGTGAACGAG TTCCAAACTCGGCTGCTGTTCAACCAAGCATTCAGCAGAGGCCTCCAGATTTCGATGATTCTGCAGGGGAGGAAAGATAAAGACAACGCAGATGCAGCTG CTGCTGCTAAGAAAGATAAGCCGCTGCCTCCCCAAGCAGCAAACAAATGA
AA sequence Show only first row Show all	>Lus10007327 pacid=23166225 polypeptide=Lus10007327 locus=Lus10007327.g ID=Lus10007327.BGIv1.0 annot-version=v1.0 MASTSGTKSDHHLPRSLSRASTIMVDLRDGDAPVIDSEVVPSSLASIAPILRVANEIQDDNPRVAYLCRFHAFEKAHKMDPTSSGRGVRQFKTYLLHRLE REESETEPRLARTDPREIQLYYQKFYEENIRDGQYTKKPYGLLLAPYSFLFTIILEEMGKILQIASVLYDVLRTVVPESRVEEEVSFLNVLTPYYKEDVL YSEEELNHENEDGITILFYLQTIYRDEWRNFEERIAGSPLKDKAELTRHWVSYRAQTLARTVRGMMYYRRAVELQYLLEFAGENAIINGLPSTELSSEDR ALSDRAQAVADLKFTYVVSCQIYGAQKKSSDARDRSCYNNILNLMLKYPSLRVAYIDEREETVNGKQQKVYYSVLVKGGDKLDEEIYRIKLPGPPTEIGE GKPENQNHAIIFTRGEALQSIDMNQDNYFEEAFKMRNVLDEFVTPRRGSRKPTILGLREHIFTGSVSSLAWFMSNQETSFVTIGQRILANPLRVRFHYGH PDIFDRLFHITRGGISKASKIINLSEDVFAGFNSTSRGGYITHHEYIQVGKGRDVGMNQISLFEAKVANGNGEQTLSRDIYRLGRRFDFYRMLSFYFTTI GFYFSSMITVLTAYVFLYGRLYMVLSGVEAAIMTNPIVRQTKALEQALATQSVFQLGLLLVMPMVMEIGLEKGFRSALGDFIIMQLQLASVFFTFQLGTK SHYYGKTILHGGSKYRATGRGFVVFHAKFAENYRLHSRSHFVKGLELMMLLVIYGVYGESYRSSNLFFFISFSMWFLVCSWLFAPFVFNPSGFDWQKTVD DWTDWKHWMGNRGGIGIPPEKSWESWWDGEQEHLRYTNLRGRIMEIFLASRFFLYQYGIVYHLDIAHPLKSLLVYGLSWVVMITALLVFKMVSMGRRKFG TDFQLMFRILKALLFLGFLSVLTVLFVVCNLTISDLFVSTLAFIPTGWALLLIGQAWRGMFKGIGLWDSIKELGRAYEYIMGILIFTPIAVLSWFPFVNE FQTRLLFNQAFSRGLQISMILQGRKDKDNADAAAAAKKDKPLPPQAANK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Lus10007327 [exp]	0	1
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Lus10020750 [exp]	1.0	0.9004
AT2G07680		ATMRP11, ABCC13	ATP-binding cassette C13, mult...		Lus10041661 [exp]	2.0	0.8261
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10031582 [exp]	2.4	0.7647
AT5G66440			unknown protein		Lus10040435 [exp]	4.9	0.7763
					Lus10039535 [exp]	5.5	0.6998
AT1G73850			Protein of unknown function (D...		Lus10038936 [exp]	7.3	0.8161
AT5G16000		NIK1	NSP-interacting kinase 1 (.1)		Lus10034413 [exp]	9.2	0.7371
AT1G73850			Protein of unknown function (D...		Lus10027226 [exp]	12.0	0.7722
AT5G14940			Major facilitator superfamily ...		Lus10005603 [exp]	16.7	0.6960
AT4G35290		ATGLUR2, ATGLR3...	GLUTAMATE RECEPTOR 3.2, glutam...		Lus10013837 [exp]	18.6	0.6314

Compare expression of checked genes

Lus10007327 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.