Plant FIBer expression Database

Lus10007328 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G06475 48 / 3e-08 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020752
[exp]
123 / 3e-37 AT1G06475 51 / 2e-09 unknown protein
Lus10004931
[exp]
39 / 0.0001 AT1G06475 47 / 7e-08 unknown protein
Lus10025392
[exp]
37 / 0.001 AT1G06475 59 / 1e-12 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G058400
[exp]
54 / 7e-11 AT1G06475 64 / 5e-15 unknown protein
Potri.005G203800
[exp]
54 / 1e-10 AT1G06475 64 / 5e-15 unknown protein
Potri.004G131200
[exp]
40 / 2e-05 AT5G46295 / unknown protein
Potri.011G079900
[exp]
39 / 7e-05 AT5G46295 57 / 3e-12 unknown protein
PFAM info
Representative CDS sequence
>Lus10007328 pacid=23166209 polypeptide=Lus10007328 locus=Lus10007328.g ID=Lus10007328.BGIv1.0 annot-version=v1.0
ATGACAACGGATTCGATGATTGCAGCTTCAGGAATCACGACCTGGCCATCGTCCCTGAGGAAATCGCTGAAGAAGAACAATAAGAAATCGGAGGCGAAGA
AAGATCAGCAGTCTGAGCTGGAGGAAGATCAGGTGGCGCTTTCGGGATGGAGGTCGCGGTCTTGGACGTTGAGGAGTAGGAGATGGCGGTGGAGGTCTTC
ATCGCTGTCGTCGCTGAGAAAGCTGAGATTCGCTGAGTTGCAGATATTTCAGATGATCCACAGGAAGATCATCGACAAATTCGTGTTCAGGATTATGTAC
GTGGCGGAGGCTGTCGTCCTCGTCTCTACCCTCTGCTTCTTCTACGTCGTCTGCGGCGGCAGATTGTGA
AA sequence
>Lus10007328 pacid=23166209 polypeptide=Lus10007328 locus=Lus10007328.g ID=Lus10007328.BGIv1.0 annot-version=v1.0
MTTDSMIAASGITTWPSSLRKSLKKNNKKSEAKKDQQSELEEDQVALSGWRSRSWTLRSRRWRWRSSSLSSLRKLRFAELQIFQMIHRKIIDKFVFRIMY
VAEAVVLVSTLCFFYVVCGGRL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G06475 unknown protein Lus10007328
[exp]
0 1
AT1G33170 S-adenosyl-L-methionine-depend... Lus10010152
[exp]
3.7 0.8244
AT4G22730 Leucine-rich repeat protein ki... Lus10028916
[exp]
6.3 0.8307
AT5G63180 Pectin lyase-like superfamily ... Lus10013667
[exp]
7.2 0.8130
AT4G21450 PapD-like superfamily protein ... Lus10018534
[exp]
9.9 0.7963
AT5G47900 Protein of unknown function (D... Lus10000090
[exp]
13.6 0.8119
AT5G42560 Abscisic acid-responsive (TB2/... Lus10033152
[exp]
14.1 0.8006
AT5G63180 Pectin lyase-like superfamily ... Lus10013668
[exp]
14.2 0.8013
AT5G42560 Abscisic acid-responsive (TB2/... Lus10034519
[exp]
15.9 0.8087
AT1G04120 ATABCC5, ABCC5,... MULTIDRUG RESISTANCE PROTEIN 5... Lus10024965
[exp]
16.5 0.8145
AT1G06475 unknown protein Lus10020752
[exp]
17.7 0.7858

Lus10007328 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.