Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67930 957 / 0 Golgi transport complex protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020754 [exp] 1229 / 0 AT1G67930 969 / 0.0 Golgi transport complex protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G203900 [exp] 1056 / 0 AT1G67930 1091 / 0.0 Golgi transport complex protein-related (.1) Potri.002G058300 [exp] 1034 / 0 AT1G67930 1066 / 0.0 Golgi transport complex protein-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007330 pacid=23166193 polypeptide=Lus10007330 locus=Lus10007330.g ID=Lus10007330.BGIv1.0 annot-version=v1.0 ATGTGCGACGAGTACGATTTGCTTGGGATTGAAGTCGTGGACGAAGAACTTATGCTGGTTAGGGAAATTGGGGAGAGGTTGCGAAAGGAGGCGATGAAGG TTCTCGAGAATGGGATGGAAGGGTTAAACCAGGCTGAAGTCGGAACTGGCTTGCAGGTTTTCTATAATTTGGGAGAGTTGAAGGTGACTGTGGAGCAGTT GGTGAACAAGTACAAGGGAATTGGAGTTAAGAGTATAGGATCGGCATTGGATATGAAGGCGATTTCCATGGGAGGTGGTGGCAGCGGAGGGTTTGGACCT GGAGGGATCAGAGGGAGTGGGACGCCTCAGATTGGAGGAGGAGCAAAGGCTAGAGATGGTGTTTGGCAGAGAATGGCTAGTTGTATGGATCAGCTGCATT CTATTATGGTTGCAGTTTGGCATTTGGAAAGGGTTCTTTCCAAGAAAAGGGATCCATTCACTCATGCCTTGCTCCTGGATGAAGTTATCAAGGAAGGTGA TGCCATGTTGACAGAGCGAGTTTGGGAGGCATTAGTGAAGTCTTTTGCTACCCAGATGAAGTCTGCTTTTACAGCATCAAGCTTTGTGAAGGAAATATTT ACTACAGGATATCCAAAGCTCATTTCAATGGTGGAAAATTTACTTGACCGAATATCACGTGATACAGATGTCAAAGGGGTTTCACCAGCTATTACTTTTG AAGGAAACCAGCAGATGTTGGCAGCTATTGAAATTTTCCAGACTGCTTTCTTGACATTGTGCTTAGGTCGCCTTTCAGATCTTATAAATAACGTCTTCCC TGTGTCAAGCAGAGGAAGTGTACCTTCAAAAGACCACATCTCAAAGATCATATCACGTATTCAGGAAGAGATTGAAGCTGTTCAGTTAGATGGGCGTCTG ACTCTCTCAGTGCTGCGTGAAATTGGCAAAGTGTTGTTCCTCCTTGCTGAAAGAGCCGAGTACCAGATATCGGCTGGTCATGAGGCACGCCAAATCAGCG GTCCCGCAACTCCTGCACAGATGAGGAACTTTATACTATCTCAACATCTGCAAGAAATTCACACACGTGTATCATCTATTGTTATGAAGCTCCCAAGCAT TGCTGCTGAAGTACTATCCCCATCGTTAGGTGTAATTTTGGGAGCCGCAAGAGACTCGGTGACACCCTTGTTTAAAGCAATGATCGACCGACTGGAATCA TGCATTCTTCAAATTCATGATCAGAACTTTGGAGTCCTTGGCATGGACGCTGCGATGGACAACAACGCTTCACCATACATGGAGGAGCTGCAAAAATGTG TTCTTCACTTCCGAAAGGAGTTCTTATCTAGGCTCTTACCATCTTCTGGGAACACTGTGGCTTCAGGCACAGAAACTATATGCACCCAGCTCGTTAGAAA CATGGCGGCACGGATTCTAATATTCTTTGTCAGGCACGGCTCTTTAGTAAGACCGCTCTCGGAATCTGGGAAACTGAGAATGGCTAGAGACATGGCTGAG CTGGAGTTAACTGTAGGACAGAATCTGTTCCCAGTAGAACAACTTGGTGCACCTTATCGAGCTCTTCGAGCCTTCCGTCCTCTTATATTTTTGGAGACGT CTCAACTGGCATCTTCTCCTCTATTTCAAGACCTTCCACTGAATGTCATACTTCATCACCTATATTCTCGAGGTCCGGACGAGCTGCTGTCGCCGATGCA AAGAAACAAGCTTACTCCTCTTCAGTATTCATTATGGCTTGATTCTCAAGGGGAGGATCAGATATGGAAAGGTATCAAAGCCACCTTAGATGATTACACA GCAAAAGTCAGGTCAAGAGGAGACAAAGAATTTAGCCCTGTATATCCCCTTATGATCCAGCTAGGCTCTTCTTTTCTGGAGAATGCTAAAGGCTCTCGTT CCCCGGCTTGA
AA sequence Show only first row Show all	>Lus10007330 pacid=23166193 polypeptide=Lus10007330 locus=Lus10007330.g ID=Lus10007330.BGIv1.0 annot-version=v1.0 MCDEYDLLGIEVVDEELMLVREIGERLRKEAMKVLENGMEGLNQAEVGTGLQVFYNLGELKVTVEQLVNKYKGIGVKSIGSALDMKAISMGGGGSGGFGP GGIRGSGTPQIGGGAKARDGVWQRMASCMDQLHSIMVAVWHLERVLSKKRDPFTHALLLDEVIKEGDAMLTERVWEALVKSFATQMKSAFTASSFVKEIF TTGYPKLISMVENLLDRISRDTDVKGVSPAITFEGNQQMLAAIEIFQTAFLTLCLGRLSDLINNVFPVSSRGSVPSKDHISKIISRIQEEIEAVQLDGRL TLSVLREIGKVLFLLAERAEYQISAGHEARQISGPATPAQMRNFILSQHLQEIHTRVSSIVMKLPSIAAEVLSPSLGVILGAARDSVTPLFKAMIDRLES CILQIHDQNFGVLGMDAAMDNNASPYMEELQKCVLHFRKEFLSRLLPSSGNTVASGTETICTQLVRNMAARILIFFVRHGSLVRPLSESGKLRMARDMAE LELTVGQNLFPVEQLGAPYRALRAFRPLIFLETSQLASSPLFQDLPLNVILHHLYSRGPDELLSPMQRNKLTPLQYSLWLDSQGEDQIWKGIKATLDDYT AKVRSRGDKEFSPVYPLMIQLGSSFLENAKGSRSPA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67930			Golgi transport complex protei...		Lus10007330 [exp]	0	1
AT1G67930			Golgi transport complex protei...		Lus10020754 [exp]	1.0	0.9569
AT2G21520			Sec14p-like phosphatidylinosit...		Lus10040431 [exp]	2.0	0.9353
AT2G17980		ATSLY1	Sec1/munc18-like (SM) proteins...		Lus10014435 [exp]	2.8	0.9509
AT1G14290		SBH2	sphingoid base hydroxylase 2 (...		Lus10028725 [exp]	3.0	0.9180
AT3G13772		AtTMN7	transmembrane nine 7 (.1)		Lus10037643 [exp]	3.0	0.9392
AT5G57460			unknown protein		Lus10028963 [exp]	3.9	0.9279
AT1G35220			unknown protein		Lus10036488 [exp]	4.0	0.8966
AT5G52180			unknown protein		Lus10031574 [exp]	5.5	0.9152
AT4G01400			unknown protein		Lus10002677 [exp]	6.9	0.9192
AT1G62020			Coatomer, alpha subunit (.1)		Lus10016481 [exp]	7.3	0.9271

Compare expression of checked genes

Lus10007330 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.