Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50890 474 / 4e-167 alpha/beta-Hydrolases superfamily protein (.1) AT2G05260 154 / 7e-43 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G24230 152 / 3e-42 Lipase class 3-related protein (.1) AT4G10955 145 / 7e-40 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G24220 136 / 4e-36 Lipase class 3-related protein (.1) AT5G24180 133 / 6e-35 Lipase class 3-related protein (.1) AT5G24200 132 / 6e-35 alpha/beta-Hydrolases superfamily protein (.1) AT5G24210 118 / 1e-29 alpha/beta-Hydrolases superfamily protein (.1) AT5G24190 66 / 5e-12 Lipase class 3-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020755 [exp] 733 / 0 AT5G50890 494 / 5e-175 alpha/beta-Hydrolases superfamily protein (.1) Lus10031455 [exp] 555 / 0 AT5G50890 478 / 4e-169 alpha/beta-Hydrolases superfamily protein (.1) Lus10001506 [exp] 540 / 0 AT5G50890 469 / 1e-165 alpha/beta-Hydrolases superfamily protein (.1) Lus10003188 [exp] 157 / 4e-44 AT4G10955 456 / 7e-162 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10001819 [exp] 157 / 5e-44 AT4G10955 444 / 4e-157 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10023072 [exp] 151 / 9e-42 AT4G10955 441 / 2e-155 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10018097 [exp] 142 / 2e-38 AT5G24230 357 / 2e-122 Lipase class 3-related protein (.1) Lus10022416 [exp] 124 / 2e-32 AT5G24230 268 / 7e-89 Lipase class 3-related protein (.1) Lus10032396 [exp] 103 / 2e-24 AT4G10955 206 / 3e-102 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G204100 [exp] 512 / 0 AT5G50890 537 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G058100 [exp] 506 / 6e-180 AT5G50890 550 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G090500 [exp] 157 / 3e-44 AT4G10955 472 / 9e-168 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G141100 [exp] 155 / 1e-43 AT4G10955 464 / 7e-165 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007331 pacid=23166244 polypeptide=Lus10007331 locus=Lus10007331.g ID=Lus10007331.BGIv1.0 annot-version=v1.0 ATGGAGGCTGCCAAGGCTGAAGCAGCGAGTCCGGAGGAACAAAAGAGGGAAGTCCTTCAGGTGCTAGAAGTAGCGTCGTCGACGGCGCCTTCTCCGCCAC CGCAGACGTCGTCTCACCCATTTGCATTTCATGTCTCTGGCCCCCGCAACGTGGCCACTCCTAATTGGAGAGAGATCATCAGTTCCAGTTGGAAAGACGA CAACTACAAGAGGGCAGCCATAGCATGCTTCATCCAAGCAGTCTACTTACTAGAGCTAGACAGGCAAGAATCCAGAACACCAGAAGACGCCCTAGCACCA ACATGGTGGACAAGATTCAAGTACAAAATAACCGAAACCTTAATCGATGAGAGGGACGGATCCATATTCGGCGCAATCCTCGAATGGGACCGATCAGCCG CATTGTCACACATGATCCTCATCAGACCTAGTGGAGCTCCCAGGGCCGTCCTGGCACTTCATGGGACCATACTCAAGGGCCCCACAATGAAACGAGACAT CCAGGACGACCTCCGTTTCTTAGCATGGGAGAGCCTCAAGGGCTCAGTCCGATTCAACGTGGCTCTCAAAGCGTTAAGATTTGTAGCCGAGAGGTATGGA GGAGGCAATGTGTGTGTTGCAGGTCATTCCTTGGGAGCTGGATTTGCTCTTCAGGTGGGGAAGGCGTTGGCTAAAGAAGGGATATTTGTTGATGCTCATC TGTTCAATCCTCCGTCGGTGTCTTTGGCTATGAGCTTTAGGAACGTCGGGGAGAAGGTCGAGTTTGCGTGGAAGAGGTTCAAGGCGATGCTTCCTTATGG GTCGGCAAATTCCGAGAATTCTGAAAATGTTGAGTTGCAGAATGGGAGTGGTGGTGGGTTTAGGAGGTGGATTTCGTCGAAGACGTTGATGGGGTCGAAG AAGTGGGTGCCGCATCTGTATGTGAATAATAGTGACTACATCTGCTGTCACTACAGCAACCCAGGAGGGAATGGAGGAGGGAAGAGTAATGGCAATGGTG GTGGAGATGATAAGGAGAATGTGGATAGTAATGGAAACGGAAGTAAGGCGATTGGTCAGGTTTCGGCGAAGCTATTCGTGATGGCGAAGGAGAAACAGAA GTTTCTTGAAGCTCATGGGTTGGAGCAATGGTGGTCTGATGATGCTCAGGGGCTGAAATCGAATAATCCCAACAGCAAGCTGATGAGCAGGCAGCTGAAA TCACTGTATAGTCTCCCAGCTCAACCAACTCAAAGCAAGATACAACAATAA
AA sequence Show only first row Show all	>Lus10007331 pacid=23166244 polypeptide=Lus10007331 locus=Lus10007331.g ID=Lus10007331.BGIv1.0 annot-version=v1.0 MEAAKAEAASPEEQKREVLQVLEVASSTAPSPPPQTSSHPFAFHVSGPRNVATPNWREIISSSWKDDNYKRAAIACFIQAVYLLELDRQESRTPEDALAP TWWTRFKYKITETLIDERDGSIFGAILEWDRSAALSHMILIRPSGAPRAVLALHGTILKGPTMKRDIQDDLRFLAWESLKGSVRFNVALKALRFVAERYG GGNVCVAGHSLGAGFALQVGKALAKEGIFVDAHLFNPPSVSLAMSFRNVGEKVEFAWKRFKAMLPYGSANSENSENVELQNGSGGGFRRWISSKTLMGSK KWVPHLYVNNSDYICCHYSNPGGNGGGKSNGNGGGDDKENVDSNGNGSKAIGQVSAKLFVMAKEKQKFLEAHGLEQWWSDDAQGLKSNNPNSKLMSRQLK SLYSLPAQPTQSKIQQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50890			alpha/beta-Hydrolases superfam...		Lus10007331 [exp]	0	1
AT5G50890			alpha/beta-Hydrolases superfam...		Lus10020755 [exp]	4.9	0.9102
AT1G70340			Plant protein of unknown funct...		Lus10029158 [exp]	8.4	0.9180
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Lus10039033 [exp]	15.5	0.9084
AT4G15830			ARM repeat superfamily protein...		Lus10043416 [exp]	18.7	0.9065
AT4G14330			P-loop containing nucleoside t...		Lus10011804 [exp]	19.2	0.9080
AT5G55180			O-Glycosyl hydrolases family 1...		Lus10032562 [exp]	19.9	0.8746
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Lus10027331 [exp]	26.2	0.8980
AT5G07670			RNI-like superfamily protein (...		Lus10027218 [exp]	31.1	0.8917
AT4G01730			DHHC-type zinc finger family p...		Lus10038029 [exp]	33.7	0.9023
AT5G01910			unknown protein		Lus10014179 [exp]	34.2	0.8860

Compare expression of checked genes

Lus10007331 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.