Plant FIBer expression Database

Lus10007332 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G42975 156 / 1e-48 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020756
[exp]
243 / 1e-82 AT2G42975 174 / 1e-55 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G204200
[exp]
147 / 5e-45 AT2G42975 182 / 6e-59 unknown protein
Potri.002G058000
[exp]
135 / 3e-40 AT2G42975 146 / 9e-45 unknown protein
PFAM info
Representative CDS sequence
>Lus10007332 pacid=23166233 polypeptide=Lus10007332 locus=Lus10007332.g ID=Lus10007332.BGIv1.0 annot-version=v1.0
ATGGCGTTCAATCTAAGCGCCGCTTCACTTTCTCAGATCGCTTCGTCGTCGTCGTCGTCCTCTTCAGCTTGCGGCCATCATTTCGTGTTCTTGAAACACA
AGCATAATCCGTTGAAGCTTCGCCAGTTTTCTTCTTCCAAGGCGTTTGTTCAGGCAGAGAGCACCGAGAGCGGATTTTCGGATCCTCAACTCCCTTCCTC
TTCTCCTGAATCGGTGTCCTCGTCACGCTCCCAGCTGGATCTCTTGGAACAACTTACATCTGGTACCGGTTATGACAGTGATGGTACTTCTTCTTATCAA
CTCACGATCCGTGAGCAGCTAGCGCTGTTGGCTGAGGATAGAGATGAAGACTTTAGCATTCAGTTAGGTAAGAATCTGAAGAAGGTCAGTCCGAAGTTCT
TAACTACTTCCCAGAAGAGAAACATTAAACGGCAAGCTTACTTGAACGAAGTATCAAAGAGAAACGACTCTGTTTTCTTTGCAACTATTGGAGCCTTTGT
GATTCTTCCACCTGTGATTATCTTAGGAATTGCCATAGCTTTGGGTTATGTTCAGCTCTTCCCATAG
AA sequence
>Lus10007332 pacid=23166233 polypeptide=Lus10007332 locus=Lus10007332.g ID=Lus10007332.BGIv1.0 annot-version=v1.0
MAFNLSAASLSQIASSSSSSSSACGHHFVFLKHKHNPLKLRQFSSSKAFVQAESTESGFSDPQLPSSSPESVSSSRSQLDLLEQLTSGTGYDSDGTSSYQ
LTIREQLALLAEDRDEDFSIQLGKNLKKVSPKFLTTSQKRNIKRQAYLNEVSKRNDSVFFATIGAFVILPPVIILGIAIALGYVQLFP

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G42975 unknown protein Lus10007332
[exp]
0 1
AT5G19855 AtRbcX2 homologue of cyanobacterial Rb... Lus10002563
[exp]
2.0 0.9354
AT5G19855 AtRbcX2 homologue of cyanobacterial Rb... Lus10027363
[exp]
2.8 0.9125
AT4G01060 MYB CPL3, ETC3 ENHANCER OF TRY AND CPC 3, CAP... Lus10005949
[exp]
9.4 0.8968
AT5G19940 Plastid-lipid associated prote... Lus10026221
[exp]
11.6 0.9093
AT1G07010 AtSLP1 Shewenella-like protein phosph... Lus10031284
[exp]
13.9 0.9064
AT1G73060 LPA3 Low PSII Accumulation 3 (.1) Lus10026089
[exp]
15.5 0.9047
AT2G37240 Thioredoxin superfamily protei... Lus10014017
[exp]
17.1 0.9037
AT1G74640 alpha/beta-Hydrolases superfam... Lus10024219
[exp]
17.5 0.8973
AT2G23840 HNH endonuclease (.1) Lus10010678
[exp]
18.0 0.8825
AT1G28140 unknown protein Lus10034291
[exp]
18.4 0.8939

Lus10007332 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.