Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30890 177 / 5e-55 Cytochrome b561/ferric reductase transmembrane protein family (.1) AT4G18260 178 / 2e-52 Cytochrome b561/ferric reductase transmembrane protein family (.1) AT4G17280 54 / 4e-08 Auxin-responsive family protein (.1) AT3G59070 53 / 6e-08 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT3G25290 50 / 8e-07 Auxin-responsive family protein (.1.2) AT4G12980 48 / 2e-06 Auxin-responsive family protein (.1) AT5G47530 48 / 3e-06 Auxin-responsive family protein (.1) AT5G35735 45 / 2e-05 Auxin-responsive family protein (.1) AT5G54830 45 / 5e-05 DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein (.1) AT2G04850 40 / 0.0008 Auxin-responsive family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020757 [exp] 325 / 3e-114 AT4G18260 184 / 6e-56 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10025877 [exp] 54 / 2e-08 AT3G25290 387 / 2e-134 Auxin-responsive family protein (.1.2) Lus10038225 [exp] 53 / 5e-08 AT3G25290 283 / 6e-95 Auxin-responsive family protein (.1.2) Lus10000915 [exp] 47 / 8e-06 AT3G25290 205 / 2e-61 Auxin-responsive family protein (.1.2) Lus10012625 [exp] 46 / 1e-05 AT3G61750 400 / 7e-138 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Lus10006398 [exp] 46 / 2e-05 AT5G47530 276 / 2e-91 Auxin-responsive family protein (.1) Lus10002274 [exp] 45 / 3e-05 AT5G47530 432 / 4e-151 Auxin-responsive family protein (.1) Lus10010498 [exp] 44 / 6e-05 AT5G47530 412 / 1e-142 Auxin-responsive family protein (.1) Lus10010120 [exp] 44 / 7e-05 AT3G61750 343 / 5e-117 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G204300 [exp] 271 / 6e-92 AT2G30890 228 / 7e-75 Cytochrome b561/ferric reductase transmembrane protein family (.1) Potri.002G057900 [exp] 223 / 6e-74 AT2G30890 189 / 1e-60 Cytochrome b561/ferric reductase transmembrane protein family (.1) Potri.011G080400 [exp] 194 / 2e-61 AT4G18260 254 / 3e-81 Cytochrome b561/ferric reductase transmembrane protein family (.1) Potri.002G222700 [exp] 55 / 1e-08 AT5G35735 369 / 8e-126 Auxin-responsive family protein (.1) Potri.013G118300 [exp] 53 / 6e-08 AT5G47530 305 / 7e-101 Auxin-responsive family protein (.1) Potri.001G031600 [exp] 52 / 8e-08 AT5G47530 312 / 7e-104 Auxin-responsive family protein (.1) Potri.019G095800 [exp] 52 / 2e-07 AT5G47530 310 / 7e-103 Auxin-responsive family protein (.1) Potri.019G096300 [exp] 52 / 2e-07 AT5G47530 310 / 7e-103 Auxin-responsive family protein (.1) Potri.002G249300 [exp] 51 / 3e-07 AT3G25290 452 / 6e-159 Auxin-responsive family protein (.1.2) Potri.019G096400 [exp] 50 / 5e-07 AT5G47530 309 / 2e-102 Auxin-responsive family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0328 [flax] [poplar] 2heme_cytochrom PF03188 [flax] [poplar] Cytochrom_B561 Eukaryotic cytochrome b561
Representative CDS sequence Show only first row Show all	>Lus10007333 pacid=23166224 polypeptide=Lus10007333 locus=Lus10007333.g ID=Lus10007333.BGIv1.0 annot-version=v1.0 ATGCAGCTGCTGCAAAGTCTGGCTTCATCGATTGCCGTCTGCATTCTTCTTCTTCTCGTTGTTGCTGTTCCGCCAATCGTTAGTTCATCTGATCAAGAAC ATGTCAAACTCACAAGCAATCATTCGTTAAGCGCCGGCCACAATCACAAGCAATTGAGTCAGAAGCTATTGTTTGAGATAAAGGTACATGGGTTTCTGTT GTGGGCTTCAATGGGGTTCCTGATGCCTGTTGGGATATTAGCTATCAGAATGTCACACAGAGAAGAATGTGGAAGAAGGCTCAAGATTCTGTTCTATGTT CATTCAATTTCACAGGCAGCAGGAGCAATAATGTCCTTCAGGAACTTCAGCAACACTTTCAATAATAATCATCAAAGAATTGGTTTATCCCTCTACGGCA TAATATGGCTGCAAGGTCTAACAGGGTTCTTAAGGCCCTCAAGGGGATCCAAGGGAAGGAGCTTCTGGTTTTGTCTACACTGGATGACCGGGACTACATT GTGTGTACTTGGAATCATCAATATGTACACAGGACTACTAGCATACCACCAGAAGACATCAAGAAGTATAAGAGTATGGATTATAGCACTCACAGTTGAG GTTTGCTTATTGGCATTCTTGTACCTGTTCCAGGACAAATGGGGTTACATCAAAAGGCAAGGAGTTATCCTGGGAAATGACCCGGTTAGGCCAATGGAGA AAGTGGTTGTTTCTCCAGAAGGAGATCCCAAGACCAGATCATTTTCAAAGGCACAAGAATTAATATAG
AA sequence Show only first row Show all	>Lus10007333 pacid=23166224 polypeptide=Lus10007333 locus=Lus10007333.g ID=Lus10007333.BGIv1.0 annot-version=v1.0 MQLLQSLASSIAVCILLLLVVAVPPIVSSSDQEHVKLTSNHSLSAGHNHKQLSQKLLFEIKVHGFLLWASMGFLMPVGILAIRMSHREECGRRLKILFYV HSISQAAGAIMSFRNFSNTFNNNHQRIGLSLYGIIWLQGLTGFLRPSRGSKGRSFWFCLHWMTGTTLCVLGIINMYTGLLAYHQKTSRSIRVWIIALTVE VCLLAFLYLFQDKWGYIKRQGVILGNDPVRPMEKVVVSPEGDPKTRSFSKAQELI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18260			Cytochrome b561/ferric reducta...		Lus10007333 [exp]	0	1
AT4G18260			Cytochrome b561/ferric reducta...		Lus10020757 [exp]	1.0	0.8855
AT5G02010		ATROPGEF7, ROPG...	RHO guanyl-nucleotide exchange...		Lus10022601 [exp]	2.0	0.8738
AT5G02010		ATROPGEF7, ROPG...	RHO guanyl-nucleotide exchange...		Lus10021500 [exp]	3.0	0.8501
AT1G06980			unknown protein		Lus10038171 [exp]	3.9	0.8380
AT3G51480		ATGLR3.6	glutamate receptor 3.6 (.1)		Lus10035980 [exp]	4.0	0.8308
AT5G07800			Flavin-binding monooxygenase f...		Lus10003474 [exp]	7.7	0.8099
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10007748 [exp]	9.5	0.8116
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10020051 [exp]	13.4	0.7936
AT5G19780		TUA5	tubulin alpha-5 (.1)		Lus10020281 [exp]	13.9	0.8139
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10028401 [exp]	14.7	0.8434

Compare expression of checked genes

Lus10007333 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.