Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06550 595 / 0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT5G65940 299 / 6e-99 CHY1 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) AT2G30660 292 / 3e-96 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT2G30650 288 / 8e-95 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT4G31810 270 / 5e-87 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT3G60510 268 / 2e-86 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) AT4G13360 185 / 2e-54 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT3G24360 177 / 2e-51 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2) AT5G43280 52 / 2e-07 ATDCI1 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) AT4G16210 52 / 2e-07 ECHIA, E-COAH-2 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020758 [exp] 781 / 0 AT1G06550 602 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10038717 [exp] 285 / 3e-91 AT5G65940 565 / 0.0 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Lus10010685 [exp] 276 / 2e-89 AT4G31810 575 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10007422 [exp] 270 / 5e-87 AT4G31810 568 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10028182 [exp] 252 / 4e-81 AT3G60510 453 / 6e-160 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) Lus10042883 [exp] 221 / 2e-69 AT4G31810 394 / 4e-137 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10019396 [exp] 178 / 2e-51 AT4G13360 607 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10043253 [exp] 160 / 2e-44 AT4G13360 565 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10002583 [exp] 61 / 5e-10 AT5G43280 399 / 1e-141 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G057700 [exp] 673 / 0 AT1G06550 592 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.014G179000 [exp] 278 / 6e-91 AT5G65940 556 / 0.0 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.001G156900 [exp] 278 / 1e-90 AT3G60510 432 / 9e-151 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) Potri.014G057400 [exp] 276 / 2e-89 AT3G60510 520 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) Potri.018G018800 [exp] 266 / 1e-85 AT4G31810 565 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.018G004200 [exp] 265 / 2e-85 AT5G65940 430 / 2e-150 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.018G004150 [exp] 264 / 3e-85 AT5G65940 428 / 6e-150 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.010G170200 [exp] 263 / 5e-84 AT5G65940 388 / 6e-133 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.006G277300 [exp] 259 / 3e-83 AT5G65940 397 / 1e-137 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.018G004100 [exp] 253 / 7e-81 AT5G65940 393 / 6e-136 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF00378 [flax] [poplar] ECH_1 Enoyl-CoA hydratase/isomerase
Representative CDS sequence Show only first row Show all	>Lus10007334 pacid=23166253 polypeptide=Lus10007334 locus=Lus10007334.g ID=Lus10007334.BGIv1.0 annot-version=v1.0 ATGGCTCAAGAAGTTGTGAACCCAGAAGAGCAGGTTGTTCTTGGAGAAGAGATTGAGCGTGTAAGGCTGATCACATTGAACCGGGCCCGTCAACTGAATG TTATATCCTCCAAAGTGGTGTCTTTGCTGGCAGCTTTCCTGGAGAAATGGGAGAAAGACGACAGTGTAGAGCTTATATTGATCAAAGGCGCTGGACGGGC ATTTTCTGCTGGAGGGGATCTGAAAATGTTCTATGACGGCAGGACATCAGAGGATTCGTGCCTTGAAGTGGTCTATAGGATGTACTGGCTGTGTTACCAT ATCCATTCATATAAGAAAACACAGGTTGCGCTTGTTAATGGGATTTCAATGGGAGGTGGTGCATCTCTAATGGTTCCAATGAGGTTCTCTGTAGTGACTG AGAAAACTGTATTTGCAACACCAGAAGCAAGTATTGGATTTCATACAGATTGTGGGTTCTCCTACCTGCATTCACGCCTCCCTGGCCATCTCGGGGAGTT CTTGGCTTTGACTGGAGCAAGGCTTAATGGCAAGGAACTAGTGGCAGTTGGAATGGCAACCCATTTCGTACCATCTGAGAAACTGCCAGAACTAGAGAAG CGTTTAATCGACTTGAACTCTGGTGACAAGGATGCTGTCAAATCTGTCATAGAGGAATTCTCTCAGGATGCTCAGCTTGGAGAAGACAGTATCTTGACCA AGCAGTCAGTCATCAATGAGTGCTTTTCGAAGGACACAGTTGTTGATATCATTAAGTCATTTGAAGCAGCAGCAAACAAGGAAGGGAACGATTGGATAGT TCCTGTGCTGAAAGGGTTGAAGAGATCATCGCCTACTGGACTTAACATCACACTTCGATCCATTCGCGAAGGAAGGAAGCAAACATTGGCTGAATGTCTA AAGAAAGAGTTCAGATTGACGATAAACATACTGCGAACCAAAATCTCTGGTGATGTCTATGAGGGTATACGGGCTCTAACTATCGACAAGGATAACGCTC CCAAGTGGGATCCACCAACCTGGAAGGAGGTTGATGATTCGAAGGTGGGCATCGTGTTCCAGCCATTCGGTGAAGTGTTTGAGCTCCAGATTCCGGAGAA GGAAGAGAACAGGTGGAATGGCAAGTTTGAGAACTCGGTCTATGCAACTGCAAGTGCGAGAGAGACGGTGAAATGA
AA sequence Show only first row Show all	>Lus10007334 pacid=23166253 polypeptide=Lus10007334 locus=Lus10007334.g ID=Lus10007334.BGIv1.0 annot-version=v1.0 MAQEVVNPEEQVVLGEEIERVRLITLNRARQLNVISSKVVSLLAAFLEKWEKDDSVELILIKGAGRAFSAGGDLKMFYDGRTSEDSCLEVVYRMYWLCYH IHSYKKTQVALVNGISMGGGASLMVPMRFSVVTEKTVFATPEASIGFHTDCGFSYLHSRLPGHLGEFLALTGARLNGKELVAVGMATHFVPSEKLPELEK RLIDLNSGDKDAVKSVIEEFSQDAQLGEDSILTKQSVINECFSKDTVVDIIKSFEAAANKEGNDWIVPVLKGLKRSSPTGLNITLRSIREGRKQTLAECL KKEFRLTINILRTKISGDVYEGIRALTIDKDNAPKWDPPTWKEVDDSKVGIVFQPFGEVFELQIPEKEENRWNGKFENSVYATASARETVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06550			ATP-dependent caseinolytic (Cl...		Lus10007334 [exp]	0	1
AT2G26800			Aldolase superfamily protein (...		Lus10036056 [exp]	1.4	0.8827
AT3G19980		STPP, ATFYPP3, ...	SERINE/THREONINE PROTEIN PHOSP...		Lus10013456 [exp]	1.7	0.8526
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Lus10032750 [exp]	3.7	0.8330
AT1G22170			Phosphoglycerate mutase family...		Lus10033465 [exp]	4.5	0.8491
AT5G12840	CCAAT	NF-YA1, ATHAP2A...	"nuclear factor Y, subunit A1"...		Lus10016411 [exp]	6.0	0.8446
AT3G27960			Tetratricopeptide repeat (TPR)...		Lus10008786 [exp]	7.2	0.8789
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10025789 [exp]	8.1	0.8463
AT1G58350		ZW18	Putative serine esterase fami...		Lus10036214 [exp]	9.2	0.7983
AT4G21215			unknown protein		Lus10018373 [exp]	11.6	0.8266
AT2G25800			Protein of unknown function (D...		Lus10012969 [exp]	12.0	0.8086

Compare expression of checked genes

Lus10007334 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.