Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59080 682 / 0 Eukaryotic aspartyl protease family protein (.1.2) AT2G42980 608 / 0 Eukaryotic aspartyl protease family protein (.1) AT1G25510 253 / 8e-78 Eukaryotic aspartyl protease family protein (.1) AT3G25700 246 / 2e-75 Eukaryotic aspartyl protease family protein (.1.2) AT3G18490 243 / 1e-73 Eukaryotic aspartyl protease family protein (.1) AT1G01300 239 / 1e-72 Eukaryotic aspartyl protease family protein (.1) AT3G61820 228 / 3e-68 Eukaryotic aspartyl protease family protein (.1) AT2G03200 207 / 7e-61 Eukaryotic aspartyl protease family protein (.1) AT3G20015 206 / 5e-60 Eukaryotic aspartyl protease family protein (.1) AT5G10770 202 / 1e-58 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020759 [exp] 462 / 1e-162 AT3G59080 386 / 1e-133 Eukaryotic aspartyl protease family protein (.1.2) Lus10003999 [exp] 256 / 7e-79 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10030246 [exp] 203 / 8e-60 AT1G01300 472 / 3e-165 Eukaryotic aspartyl protease family protein (.1) Lus10042978 [exp] 205 / 1e-59 AT3G18490 504 / 3e-176 Eukaryotic aspartyl protease family protein (.1) Lus10041494 [exp] 201 / 2e-58 AT3G25700 559 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10035961 [exp] 200 / 3e-58 AT2G03200 525 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10025702 [exp] 199 / 7e-56 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041151 [exp] 184 / 3e-52 AT5G33340 445 / 1e-154 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10022912 [exp] 184 / 3e-52 AT5G33340 450 / 1e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G204600 [exp] 736 / 0 AT3G59080 686 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.010G128200 [exp] 268 / 1e-83 AT1G25510 622 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G051800 [exp] 259 / 4e-80 AT3G18490 585 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 247 / 2e-75 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 242 / 1e-73 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.008G115900 [exp] 215 / 1e-63 AT3G25700 530 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.007G106300 [exp] 211 / 8e-62 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G063000 [exp] 211 / 1e-61 AT3G20015 560 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.016G000600 [exp] 198 / 3e-57 AT5G10770 286 / 2e-91 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 195 / 3e-56 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10007335 pacid=23166197 polypeptide=Lus10007335 locus=Lus10007335.g ID=Lus10007335.BGIv1.0 annot-version=v1.0 ATGGTGTGTCCCCAATTCAGAGCTGCTTTCTTCCTGGTCCTTCCCTTGCTTCTTCTCTCCGCTGCTAGTTTCATTCTCGTCGTCAATGGCCGGGCGGTCG ATCTCAATTCCAATCTCTCATCTCTCGCCGGAATCGAATTCAACCACCACATGAACTTCAATGCCGGCTCTGCTTCAACCAACTCAGACTGCGGCCTCTC CACGACTTCAAACAAACCGACGACCCGGTCAAACGTCGCCTCTCTCGCCGGCGACGGATCGGAAAAGTCCACCGTCAAGCTCCACCTCAAGCACCGGACC CATAAAGATGGATACTTGGAATCAGCAACCAGAGATTTAGCCAGAATTCAGACGCTGCACAGAAGAATCACGGAGAAGAAGAATCAAAATTCCGCCTCCA GATTGAAGACCACCAAAAAGTCAAATCAGGTCAAACTCGCGGCGGAGAACCAGCAGACGCCGTCGGAACTATCCGGACAGCTGATGGCGACTTTGGGGTC AGGAGTGACGTCGGGCTCAGGGGAATACTTCATGGACGTATTCATCGGTACGCCTCCCAAACACTTCTCCTTGATTCTCGATACCGGCAGTGACCTAAAT TGGATCCAATGCGTCCCTTGCCATGACTGTTTCGAGCAAAACGGACCGATCTACGATCCACGAGAATCAAATTCTTACAAGAATATCACCTGTCAAGATC CTCGTTGCCAGTTAGTCTCATCGCCAGACCCGCCATTGCCGTGCAAATCCGAGAATCAGAGCTGTCCGTACTACTACTGGTATGGCGATAGTTCAAACAC CACCGGCGATTTCGCAACCGAGACGTTCACAGTCAACCTCACATCCTCTTCTGGAAAATCAGAGTTTACTCAAGTCGAGAATGTGATGATCGGATGCGGC CATTGGAATCGAGGATTGTTCCACGGTGCAGCTGGATTGCTAGGATTAGGGAGAGGTCCTCTTTCATTTGCTTCACAGCTTCAGTCTTTATATGGACATT CTTTTTCATACTGTTTGGTTGATAGAAACAGTGAGAGTAACGTCACCAGCAAGCTGATTTTTGGGGAGGATAAGGATCTGATGAGCCATCCTGAGCTGAA TTTCACTTCTTTAGTCGACGGAAAGGAGAATTCGAATCTCGTCGATACGTTCTACTACGTTCAAATCAAATCTATCGTAGTTGGCGGGGAAGTTCTCAAC ATACCTGAAGATACCTGGAATGTATTATCCGATGGTTCCGGTGGTACCATTGTCGATTCCGGTACTACGCTCAGCTACTTCTCCGAACCGGCTTACAAAG CGATTCGAGAAGCGTTTGTGAAGAGAGTGAAGGACAAGTATCCGGTTATGGATGATGTTCCGGTACTGGATCCTTGTTACAATGTCACTGGTGTTACGAA CCTCTATCTGCCAGAGTTCAAGATTGTGTTTGCAGATGGGGGAGTGTGGGATTTCCCAGTTGAGAACTACTTCATATGGCTGCAACCAGGGGAAGTTGTT TGCTTGGCGATTCTCGGGACTCCGAGGTCAGCTCTTTCGATCATTGGGAACTACCAGCAGCAGAACTTCCACATACTGTATGATACAAAGAGGTCGAGAA TCGGGTATGCGCCGACGAAGTGTGCTGATGTGTAG
AA sequence Show only first row Show all	>Lus10007335 pacid=23166197 polypeptide=Lus10007335 locus=Lus10007335.g ID=Lus10007335.BGIv1.0 annot-version=v1.0 MVCPQFRAAFFLVLPLLLLSAASFILVVNGRAVDLNSNLSSLAGIEFNHHMNFNAGSASTNSDCGLSTTSNKPTTRSNVASLAGDGSEKSTVKLHLKHRT HKDGYLESATRDLARIQTLHRRITEKKNQNSASRLKTTKKSNQVKLAAENQQTPSELSGQLMATLGSGVTSGSGEYFMDVFIGTPPKHFSLILDTGSDLN WIQCVPCHDCFEQNGPIYDPRESNSYKNITCQDPRCQLVSSPDPPLPCKSENQSCPYYYWYGDSSNTTGDFATETFTVNLTSSSGKSEFTQVENVMIGCG HWNRGLFHGAAGLLGLGRGPLSFASQLQSLYGHSFSYCLVDRNSESNVTSKLIFGEDKDLMSHPELNFTSLVDGKENSNLVDTFYYVQIKSIVVGGEVLN IPEDTWNVLSDGSGGTIVDSGTTLSYFSEPAYKAIREAFVKRVKDKYPVMDDVPVLDPCYNVTGVTNLYLPEFKIVFADGGVWDFPVENYFIWLQPGEVV CLAILGTPRSALSIIGNYQQQNFHILYDTKRSRIGYAPTKCADV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59080			Eukaryotic aspartyl protease f...		Lus10007335 [exp]	0	1
AT3G25250		AtOXI1, OXI1, A...	oxidative signal-inducible1, A...		Lus10025882 [exp]	1.4	0.9442
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10015349 [exp]	4.7	0.9226
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10013589 [exp]	5.5	0.9355
AT1G65800		ARK2	receptor kinase 2 (.1)		Lus10007602 [exp]	5.7	0.9170
AT4G36500			unknown protein		Lus10014291 [exp]	6.0	0.9223
AT4G04960			Concanavalin A-like lectin pro...		Lus10018602 [exp]	8.7	0.9183
					Lus10039442 [exp]	9.0	0.9018
AT1G56240		ATPP2-B13	phloem protein 2-B13 (.1)		Lus10031471 [exp]	9.5	0.9226
AT1G65690			Late embryogenesis abundant (L...		Lus10007364 [exp]	9.9	0.9383
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10015208 [exp]	12.0	0.9305

Compare expression of checked genes

Lus10007335 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.