Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53580 356 / 2e-123 GLY3, GLX2-3, ETHE1 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2) AT3G10850 57 / 2e-09 GLY2, GLX2-2 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) AT2G31350 54 / 4e-08 GLX2-5 glyoxalase 2-5 (.1.2) AT1G06130 45 / 3e-05 GLX2-4 glyoxalase 2-4 (.1.2) AT2G43430 45 / 3e-05 GLY1, GLX2-1 GLYOXALASE II, glyoxalase 2-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020760 [exp] 465 / 1e-166 AT1G53580 417 / 3e-148 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2) Lus10034259 [exp] 59 / 7e-10 AT3G10850 440 / 2e-158 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10029086 [exp] 57 / 4e-09 AT3G10850 443 / 1e-159 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10033662 [exp] 54 / 5e-08 AT2G43430 447 / 1e-159 GLYOXALASE II, glyoxalase 2-1 (.1.2) Lus10017706 [exp] 54 / 6e-08 AT1G06130 501 / 3e-180 glyoxalase 2-4 (.1.2) Lus10039860 [exp] 51 / 4e-07 AT1G06130 493 / 6e-177 glyoxalase 2-4 (.1.2) Lus10029004 [exp] 49 / 1e-06 AT3G10850 397 / 1e-141 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10018625 [exp] 44 / 0.0001 AT2G31350 418 / 5e-148 glyoxalase 2-5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G204800 [exp] 371 / 2e-129 AT1G53580 395 / 3e-139 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2) Potri.001G380100 [exp] 357 / 3e-124 AT1G53580 407 / 2e-144 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2) Potri.019G062600 [exp] 66 / 3e-12 AT3G10850 415 / 1e-148 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Potri.017G026500 [exp] 50 / 9e-07 AT1G06130 515 / 0.0 glyoxalase 2-4 (.1.2) Potri.007G131300 [exp] 43 / 0.0002 AT1G06130 503 / 0.0 glyoxalase 2-4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0381 [flax] [poplar] Metallo-HOrase PF00753 [flax] [poplar] Lactamase_B Metallo-beta-lactamase superfamily
Representative CDS sequence Show only first row Show all	>Lus10007336 pacid=23166248 polypeptide=Lus10007336 locus=Lus10007336.g ID=Lus10007336.BGIv1.0 annot-version=v1.0 ATGCTCCGAGCCAGCTTGATTCACCTCTGCTCATACTCTCCAAGGTCTCTTTCTCGCCAGCATCGAGTTCTTTCGTTGCCGAAATCGAGAAGCGGAGTGT TTCGTTGGAGCGCAATGAGGGATTACAGCAACTCGTCGAATCTTTCTTCCAGCAAGTTATTGTTTCGCCAGCTCTTCGAGAAGGACTCATCGACTTTCAC TTATCTGCTGGCAGATGTTGGCCACCCCGATAAGCCTGCTCTGCTGATTGACCCAGTTGATAAGACAGTAGATAGGGACATCTCCCTCGTAAAAGACCTG GGTTTAAAGCTACAATATGCCATAAACACTCATGTTCATGCTGACCATATAACAGGGACTGGTTTGCTAAAGACAAAGATCCCTGGTGTGAAATCAGCTA TCTCAAAAGCAAGCAACTCCAAAGCTGATATGCACGTTGAAGCTGGAGATAAGATCTATTTTGGAGATCTTTTCCTGGAGGTTAGAGCTACCCCTGGGCA CACACAGGGCTGTGTCACCTATGTTACAGGAAATGGGCCTGACCAACCCAAACCAAGGATGGCATTCACTGGGGATGCTGTGCTGATACGTGGATGTGGA AGAACGGATTTTCAGTCTCTTAAATTACGTGCAGGGTGGGAGCTCGCATCAACTATATCATTCTGTGCATTCTCAGGTTTCAAGACTGGATCTGTACCTG CTATTGTAAACTTGTTATATTTACCGATTAACATTTCCTCATTACGATTGAACCAGATCTTCACCTTGCCCGAGGACACCTTCATCTATCCTGCACATGA TTACAAGGGATTCACTGTTAGCACAGTTGGAGAAGAGAGGCAACACAATCCTAGGCTCACCAAAGATGAGGAAACATTCAAGAGCATCATGGAAAATCTG AAACTTCCATACCCTAAAATGATTGATGTAGCTGTTCCTGCAAACCTGATTTGTGGGTTGCAAGATCATTGA
AA sequence Show only first row Show all	>Lus10007336 pacid=23166248 polypeptide=Lus10007336 locus=Lus10007336.g ID=Lus10007336.BGIv1.0 annot-version=v1.0 MLRASLIHLCSYSPRSLSRQHRVLSLPKSRSGVFRWSAMRDYSNSSNLSSSKLLFRQLFEKDSSTFTYLLADVGHPDKPALLIDPVDKTVDRDISLVKDL GLKLQYAINTHVHADHITGTGLLKTKIPGVKSAISKASNSKADMHVEAGDKIYFGDLFLEVRATPGHTQGCVTYVTGNGPDQPKPRMAFTGDAVLIRGCG RTDFQSLKLRAGWELASTISFCAFSGFKTGSVPAIVNLLYLPINISSLRLNQIFTLPEDTFIYPAHDYKGFTVSTVGEERQHNPRLTKDEETFKSIMENL KLPYPKMIDVAVPANLICGLQDH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53580		GLY3, GLX2-3, E...	GLYOXALASE 2-3, ETHE1-LIKE, gl...		Lus10007336 [exp]	0	1
AT5G05760		ATSYP31, ATSED5...	T-SNARE SED 5, syntaxin of pla...		Lus10028277 [exp]	20.0	0.7408
AT1G21780			BTB/POZ domain-containing prot...		Lus10029677 [exp]	20.5	0.7744
AT5G65660			hydroxyproline-rich glycoprote...		Lus10042928 [exp]	21.2	0.7375
AT3G51630		ATWNK5, ZIK1, W...	with no lysine (K) kinase 5 (....		Lus10022747 [exp]	24.3	0.7680
AT1G08800			Protein of unknown function, D...		Lus10006566 [exp]	26.0	0.6986
AT5G19070			SNARE associated Golgi protein...		Lus10034028 [exp]	27.8	0.7173
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10036754 [exp]	33.8	0.7480
AT5G38895			RING/U-box superfamily protein...		Lus10034367 [exp]	35.9	0.7087
AT2G38320		TBL34	TRICHOME BIREFRINGENCE-LIKE 34...		Lus10022676 [exp]	38.8	0.7150
AT1G02120		VAD1	VASCULAR ASSOCIATED DEATH1, GR...		Lus10028209 [exp]	41.3	0.6994

Compare expression of checked genes

Lus10007336 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.