Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06560 725 / 0 NOL1/NOP2/sun family protein (.1) AT3G13180 60 / 3e-09 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1) AT4G26600 56 / 5e-08 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G55920 56 / 6e-08 OLI2 OLIGOCELLULA 2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G26180 55 / 1e-07 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G66180 54 / 2e-07 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT2G22400 49 / 8e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G40000 45 / 0.0001 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020761 [exp] 1184 / 0 AT1G06560 714 / 0.0 NOL1/NOP2/sun family protein (.1) Lus10026452 [exp] 65 / 9e-11 AT5G26180 567 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10041897 [exp] 62 / 9e-10 AT4G10770 1097 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Lus10025004 [exp] 59 / 5e-09 AT5G26180 566 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10023095 [exp] 59 / 1e-08 AT4G26600 736 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10016622 [exp] 58 / 2e-08 AT3G13180 759 / 0.0 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1) Lus10032368 [exp] 58 / 2e-08 AT4G26600 736 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10028444 [exp] 57 / 2e-08 AT5G66180 534 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10022523 [exp] 50 / 3e-06 AT3G13180 323 / 1e-107 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G204900 [exp] 788 / 0 AT1G06560 758 / 0.0 NOL1/NOP2/sun family protein (.1) Potri.007G056800 [exp] 66 / 3e-11 AT5G66180 502 / 2e-178 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.001G368500 [exp] 61 / 1e-09 AT3G13180 770 / 0.0 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1) Potri.006G224000 [exp] 59 / 6e-09 AT5G26180 585 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.001G369600 [exp] 58 / 1e-08 AT4G26600 696 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G096100 [exp] 52 / 1e-06 AT2G22400 1012 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [flax] [poplar] PUA PF01472 [flax] [poplar] PUA PUA domain CL0063 [flax] [poplar] NADP_Rossmann PF01189 [flax] [poplar] Methyltr_RsmB-F 16S rRNA methyltransferase RsmB/F
Representative CDS sequence Show only first row Show all	>Lus10007337 pacid=23166241 polypeptide=Lus10007337 locus=Lus10007337.g ID=Lus10007337.BGIv1.0 annot-version=v1.0 ATGAGAAGAGGGAGGGATTTTCTTCTGTCCACCTTCCGCACGACCTCCTTCGCTCGTCGTCGTACCAACGGTAACTTCTGCACATCAGCACCACTTCATC TTGCCAAGATGGACAACCAGTCGGACTCTGAGCGTTACACTTTCAATCCCGTCCTGCGATGGAACCCTGAGGTTGAGCGGTACTTCATCCATGCCAATGG CGCTGACCACTTTACCCGCATTTCTACAGCCCTAGCAAAACCGTCGTGTTATTCTTGCATACGAGTCAACTCGCTGAAGTCGACGAGTGACGCCGTGATC GAGAAGCTTCAGGTAATCATAGGGGAAAATGAGATGGAAGGAGGTAATGACGAAGTAGAATGCGAAGCAAATGCGAGCGTTGAGAAGAGTCTTCTTGATG AAAGCTGGAAAGATGGCCGAATTGCTAAGTGCAAGATCCCTGGATTGGACTACGTTGTGTTAGTCAAGGGATCAGGACCTCGCGCAGTTGATTATGGCAA CGCACCTGGTGCTCCACCCAAGGAGGTGATGGTTAGCAGGAAATGTGCAGAAGCCGTCCTCCGGGGTGCTCAGGTATATGTTCCTGGTGTGCTGGCTTGT AGCGCTCATGTTGAAAAAGGAGATACAGTTGCCGTTTCAGTTGGTGTGGAGCAGCGGATGGCTGATGGTGGATGGGCTACTGGCATGACTCGTGGCATGG TTTTACAGGGACTGGAGACAGGCAAGAAGGATATCTTAGTTTCCAATCCTCATTATAACGAAAGAATAGGGCTGTATATTGGCCAAGGTAAAGCAATGCT GTCAAGAACTGGATTATTCCGTAGTATGGAAGGAATTGCTGTAGATATGAATAATCGGGTATTTAAGCTCCCCTCTTTCCATGATGTGCTCGAGGGGGAA ATATTTCTTCAGAACCTGCCCAGCATAATTGCTGCTCATGCCCTTGATCCCAAAAAGGGTGAACGCATACTGGACATGTGTGCAGCGCCAGGAGGAAAGA CTACTGCAATTGCACATCTTATGAAAGATGATGGTGAAGTAGTTGCAGCGGATAGGTCTCACAATAAGGTATTAGATATTCAAAAGCTGGTTGCTGAAAT GGGCTTTACATGCATAACGACTTACAGGCTAGATGCTCTCAAATCTGTATCCCAATCAAATGAATCCGTTGACAGTGGCATATCACAAAATTCCATTTCT ATGACCACTAATGAGAAGCAAAAGTCATCAAGTGACCTGTTATCTGGTGATAAGACACGTGGGGAAAATGAAAATGTTTTCAGGGAGAAGAAAGATGATA ACAGCTATATGAGTCAAGCTGAAGTCAGAAAGAAAATGCGGCAAATGAAAAATGGGCTTGGGAAAAATAATGATTCATGCCGGCTTGAGAAGTTTAAAGG GTTTCCCCCTGCCAGTTTTGACCGGGTTCTGCTTGATGCTCCTTGTTCTGCTCTTGGTTTGAGGCCTAGGCTTTTTGCTGGAGAGGACACAATACAATCT CTGAGAAACCATGGAACCTATCAGAGGAAAATGTTTGACCAAGCTGTTAAACTAGTTCGCCCCGGTGGAGTTATCGTGTATTCAACGTGCACACTAAATC CTGGTGAGAATGAAGCATTGGTACGGTATGCTTTGGACACGTACAAATTTCTCTCACTAGCTCATCAGCATCCAAGAGTCGGAGGACCTGGTCTTGTTGG CCATTATGAATTCCCAGATGGTTATATCGAGAAGTGGTTAAAGCCTGGAGAGGAAGACTACGTTCAGAGATTCGATCCGTCGGGTCCCCTTGACACAATT GGATTCTTCATAGCCAAGTTTGTAGTTGGCTCGAAGGACAATGTCTAG
AA sequence Show only first row Show all	>Lus10007337 pacid=23166241 polypeptide=Lus10007337 locus=Lus10007337.g ID=Lus10007337.BGIv1.0 annot-version=v1.0 MRRGRDFLLSTFRTTSFARRRTNGNFCTSAPLHLAKMDNQSDSERYTFNPVLRWNPEVERYFIHANGADHFTRISTALAKPSCYSCIRVNSLKSTSDAVI EKLQVIIGENEMEGGNDEVECEANASVEKSLLDESWKDGRIAKCKIPGLDYVVLVKGSGPRAVDYGNAPGAPPKEVMVSRKCAEAVLRGAQVYVPGVLAC SAHVEKGDTVAVSVGVEQRMADGGWATGMTRGMVLQGLETGKKDILVSNPHYNERIGLYIGQGKAMLSRTGLFRSMEGIAVDMNNRVFKLPSFHDVLEGE IFLQNLPSIIAAHALDPKKGERILDMCAAPGGKTTAIAHLMKDDGEVVAADRSHNKVLDIQKLVAEMGFTCITTYRLDALKSVSQSNESVDSGISQNSIS MTTNEKQKSSSDLLSGDKTRGENENVFREKKDDNSYMSQAEVRKKMRQMKNGLGKNNDSCRLEKFKGFPPASFDRVLLDAPCSALGLRPRLFAGEDTIQS LRNHGTYQRKMFDQAVKLVRPGGVIVYSTCTLNPGENEALVRYALDTYKFLSLAHQHPRVGGPGLVGHYEFPDGYIEKWLKPGEEDYVQRFDPSGPLDTI GFFIAKFVVGSKDNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06560			NOL1/NOP2/sun family protein (...		Lus10007337 [exp]	0	1
AT5G23880		ATCPSF100, EMB1...	ENHANCED SILENCING PHENOTYPE 5...		Lus10035061 [exp]	1.4	0.9438
AT5G56900	C3HZnF		CwfJ-like family protein / zin...		Lus10021589 [exp]	2.0	0.9334
AT1G10930		ATSGS1, RECQL4A...	DNA helicase (RECQl4A) (.1)		Lus10015467 [exp]	4.2	0.9170
AT3G07610		IBM1	increase in bonsai methylation...		Lus10015260 [exp]	4.4	0.8931
AT1G26370		RID1	RNA helicase family protein (....		Lus10037067 [exp]	6.3	0.9084
AT5G11240			transducin family protein / WD...		Lus10033468 [exp]	7.1	0.9177
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Lus10030364 [exp]	7.3	0.9257
AT1G21730			P-loop containing nucleoside t...		Lus10018145 [exp]	8.2	0.9255
AT1G79950			RAD3-like DNA-binding helicase...		Lus10037532 [exp]	9.6	0.8720
AT5G63110		RPD3B, CAT1, AX...	RNA-MEDIATED TRANSCRIPTIONAL S...		Lus10043337 [exp]	10.3	0.8443

Compare expression of checked genes

Lus10007337 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.