Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29370 68 / 8e-15 Kinase-related protein of unknown function (DUF1296) (.1) AT1G29350 68 / 9e-15 Kinase-related protein of unknown function (DUF1296) (.1) AT4G18150 54 / 8e-10 Kinase-related protein of unknown function (DUF1296) (.1) AT3G13990 51 / 9e-09 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) AT3G07660 47 / 1e-07 Kinase-related protein of unknown function (DUF1296) (.1) AT5G46380 45 / 1e-06 Kinase-related protein of unknown function (DUF1296) (.1) AT3G13222 37 / 0.001 GIP1 GBF-interacting protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020762 [exp] 107 / 9e-29 AT1G29370 70 / 4e-12 Kinase-related protein of unknown function (DUF1296) (.1) Lus10015262 [exp] 64 / 4e-13 AT1G29370 574 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10004543 [exp] 63 / 6e-13 AT1G29370 641 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10004604 [exp] 63 / 8e-13 AT1G29370 644 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10025382 [exp] 57 / 5e-11 AT1G29350 513 / 4e-171 Kinase-related protein of unknown function (DUF1296) (.1) Lus10036414 [exp] 56 / 3e-10 AT3G07660 656 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10041089 [exp] 55 / 4e-10 AT3G07660 662 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10015640 [exp] 54 / 8e-10 AT3G13990 561 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) Lus10037658 [exp] 49 / 6e-08 AT3G13990 560 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G169900 [exp] 62 / 1e-12 AT3G07660 491 / 1e-160 Kinase-related protein of unknown function (DUF1296) (.1) Potri.011G078800 [exp] 61 / 2e-12 AT1G29350 650 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Potri.003G063300 [exp] 61 / 3e-12 AT3G13990 619 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) Potri.001G353100 [exp] 59 / 2e-11 AT1G29350 649 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Potri.001G170700 [exp] 58 / 3e-11 AT3G13990 557 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) Potri.002G217000 [exp] 57 / 6e-11 AT3G07660 600 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Potri.002G059300 [exp] 51 / 1e-08 AT1G29350 172 / 3e-44 Kinase-related protein of unknown function (DUF1296) (.1) Potri.011G079800 [exp] 49 / 7e-08 AT3G07660 125 / 2e-29 Kinase-related protein of unknown function (DUF1296) (.1) Potri.001G370900 [exp] 43 / 4e-06 AT3G07660 124 / 3e-29 Kinase-related protein of unknown function (DUF1296) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF06972 [flax] [poplar] DUF1296 Protein of unknown function (DUF1296)
Representative CDS sequence Show only first row Show all	>Lus10007338 pacid=23166240 polypeptide=Lus10007338 locus=Lus10007338.g ID=Lus10007338.BGIv1.0 annot-version=v1.0 ATGGGGAGCGAAAGCGGAAGCAAAAGCAGCAATGGCGGCGGCGGCGGTAGCGGCGCTACGACTCTCCAGCAAGTTCCGACGGGGCACAAGAAGATTGTTC AGAGTTTAAAGGAGGTAGTCAACAACGGCGACTACACCGACGCTGAGATCTACGCTGTTCTCCAGGAATGTGACATGGACCCCAATGAAGCCGTCCAGAA GCTACTTTCCCAAGGTCTCCGTTTAATTTTTGTCTTCTCTTCGGTTCAGTACGGCACTGCGAGTTGTTGTGTGGCGTAG
AA sequence Show only first row Show all	>Lus10007338 pacid=23166240 polypeptide=Lus10007338 locus=Lus10007338.g ID=Lus10007338.BGIv1.0 annot-version=v1.0 MGSESGSKSSNGGGGGSGATTLQQVPTGHKKIVQSLKEVVNNGDYTDAEIYAVLQECDMDPNEAVQKLLSQGLRLIFVFSSVQYGTASCCVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29370			Kinase-related protein of unkn...		Lus10007338 [exp]	0	1
AT1G79730		ELF7	EARLY FLOWERING 7, hydroxyprol...		Lus10037558 [exp]	7.3	0.8481
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Lus10009241 [exp]	13.3	0.8481
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Lus10038094 [exp]	14.1	0.8151
AT4G10070			KH domain-containing protein (...		Lus10003519 [exp]	16.7	0.8260
AT2G20580		RPN1A, AtRPN1a	26S proteasome regulatory subu...		Lus10039885 [exp]	26.5	0.8049
AT4G30935	WRKY	ATWRKY32, WRKY3...	WRKY DNA-binding protein 32 (....		Lus10022150 [exp]	28.6	0.7871
AT5G05240			Uncharacterised conserved prot...		Lus10029030 [exp]	29.1	0.8236
AT1G38131			O-fucosyltransferase family pr...		Lus10025630 [exp]	34.1	0.7670
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Lus10011054 [exp]	41.0	0.8110
AT5G04560		DME1, DME	DEMETER, HhH-GPD base excision...		Lus10027713 [exp]	42.3	0.8108

Compare expression of checked genes

Lus10007338 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.