Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29370 80 / 2e-15 Kinase-related protein of unknown function (DUF1296) (.1) AT1G29350 79 / 4e-15 Kinase-related protein of unknown function (DUF1296) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020762 [exp] 421 / 3e-139 AT1G29370 70 / 4e-12 Kinase-related protein of unknown function (DUF1296) (.1) Lus10004543 [exp] 102 / 4e-22 AT1G29370 641 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10015262 [exp] 100 / 8e-22 AT1G29370 574 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10025382 [exp] 78 / 1e-14 AT1G29350 513 / 4e-171 Kinase-related protein of unknown function (DUF1296) (.1) Lus10000188 [exp] 76 / 2e-14 AT1G29350 305 / 6e-96 Kinase-related protein of unknown function (DUF1296) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G059300 [exp] 221 / 7e-62 AT1G29350 172 / 3e-44 Kinase-related protein of unknown function (DUF1296) (.1) Potri.011G078800 [exp] 137 / 1e-33 AT1G29350 650 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Potri.005G202851 [exp] 98 / 5e-21 AT1G29370 57 / 2e-08 Kinase-related protein of unknown function (DUF1296) (.1) Potri.001G353100 [exp] 43 / 0.0007 AT1G29350 649 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007339 pacid=23166232 polypeptide=Lus10007339 locus=Lus10007339.g ID=Lus10007339.BGIv1.0 annot-version=v1.0 ATGGCTGACATTGTCAGGATGGGAGGACCTAACAAGAAGGGTATACAAACATCAGCGGGGACATCATCACACTCACTACTAGATGTAGATTCTGATGGCT GGGACCATAATTCTTTTAAAACATCACTTTCTCAATCCGAAATAGACCAAAATGTTCAATATCCACTTCTTCCAAATGGTTCAGAGGGTGTTCTTGAATC TAGTCTACTTCCAAACGAGTTTGGGTTTGATGATGAGCGGCCTGAGCAGAGTTCAGCCCATCCATCTGCATTTAGTAGTTCTATCGCCACTTTGTCGGAT AGATTTTCCACCCAGAGTTACGTACATGGAACCAAATGTGAAATACATGTCAATGGTCCTTGCGATGCAGCCACATCATTAGAGGCAGATTATGCTTCCA AGAATCGAGGCTCAGATTCTGCGAAACCGGCTCCCTTGTCTGCTACCAGAGGAAGCGGGTCTCATTTAGCATCTCATCAGAATTCTTCAGCGGGAATATC ACCTCCTGCTGAGAGCTTGCAGAAGCTGAGCTTGGAAGAGAAGCCTGCAGAGGTTACATCAGATAACAAACATGGCGTGGTTTTCCCAGATTACATTCAA ACTTTAGCTGCTGACTGCTCACATTTGAGCTTTGGGACATATAAACCTGGAGCACATTCTGCAGTGTCTGGGCCTGCTATGTCTGATTCCACAGAGAGTC GCCTATCTTTGAATGTGTGGTTGCCTGGAGATTCACCTAAGCCTGAACAGCTTGTGTCCATAAGCAATACTCCCCTGTCAGCTTTTGGCGCTACGAATAA TGGCTTGCCTGTACAGTTACAACCAGACTTGGTACGAGGGAATGTCCCTTCAGTAACTCAGCAACAGGATTATTTCTCCCACTTTTCTCTACCTGATTCT ACTTTAACGCAATTCCAAGACCATAATACTTCATCATCTATTATGACGCATCCAAATGCTTTGAATGCTCCTTCCCTTCGGCAACAACTGCGAGTGAATG ATGTGAATCCGAATACAATTCCAACCGACTTCTTGACCTCTAATTTGGATTCTCTACGGAACCATGATGAACTCCTTTCAACATTTGGCTCTACCCAGCA AATTCCCCTTTCGCGCTATGGAAATATTACACCATCAACTGCTAGTTCGTCCATTTTGATTCCAGAGGTTCTGAACTCTAGTGCCCATGCTTTACCAATG TCCTATTCACAAGGTTTTCCTGTCAGTAGTCTTCCCAGGGAGCATGCTCTATCACAGCATGCACCATCATCACAGCCGTTCTCCCAGCCTTCCCTGACGT TAGAAGAATTGGCGAAGCTGCCTGGATTTGCAGCTCTCTCTCAGAATTATGCCCACCGTCCATCCCCTTTGCAGCAGCAGCAACAGCGATATGAAGAAAG TTCTATGTACCATGATTCCTTGGCGAGGATGAAGAACCTCTCACAACTGAATGGGGATGCTTCTAGGAGTAACTTTCTTCAGTCAGATGCCAATGTTTCA GGCTACGGAGCATTTGGGAGGCAATCCAACTATAGGGAGAGCTTTCCTCGGGATTTTTCTTCAAATCTTTCTGGTTCTGCTGTCGGATATGGTGACACCT TCCATTCTACGTCGGTTAATGGTGTAAAAAGTCTATCCTCACTCCCACAGAATGGCATTTCTTCTCCATGGGAGTATGGGCTTGGCACGGGAACCTTATC AGGCATTCCGGACAACCAGTATCGTAGTCAGCGAGGATATAGTCAATTGCATCCTAGCTATAAGCAAGACGAGCAACTTTCTCGAAACTACAGTTCTCTC AGATATGGTAGCTTGTATCCTTCTCAAGGAAGTCTAGCACAAGAACAATGGAGAGACGCCGGTAATGCTAGTAATTATCAAGGTCCATCATCCAAGCAAC AACAAATCTGGGGGCAAAACTACTGA
AA sequence Show only first row Show all	>Lus10007339 pacid=23166232 polypeptide=Lus10007339 locus=Lus10007339.g ID=Lus10007339.BGIv1.0 annot-version=v1.0 MADIVRMGGPNKKGIQTSAGTSSHSLLDVDSDGWDHNSFKTSLSQSEIDQNVQYPLLPNGSEGVLESSLLPNEFGFDDERPEQSSAHPSAFSSSIATLSD RFSTQSYVHGTKCEIHVNGPCDAATSLEADYASKNRGSDSAKPAPLSATRGSGSHLASHQNSSAGISPPAESLQKLSLEEKPAEVTSDNKHGVVFPDYIQ TLAADCSHLSFGTYKPGAHSAVSGPAMSDSTESRLSLNVWLPGDSPKPEQLVSISNTPLSAFGATNNGLPVQLQPDLVRGNVPSVTQQQDYFSHFSLPDS TLTQFQDHNTSSSIMTHPNALNAPSLRQQLRVNDVNPNTIPTDFLTSNLDSLRNHDELLSTFGSTQQIPLSRYGNITPSTASSSILIPEVLNSSAHALPM SYSQGFPVSSLPREHALSQHAPSSQPFSQPSLTLEELAKLPGFAALSQNYAHRPSPLQQQQQRYEESSMYHDSLARMKNLSQLNGDASRSNFLQSDANVS GYGAFGRQSNYRESFPRDFSSNLSGSAVGYGDTFHSTSVNGVKSLSSLPQNGISSPWEYGLGTGTLSGIPDNQYRSQRGYSQLHPSYKQDEQLSRNYSSL RYGSLYPSQGSLAQEQWRDAGNASNYQGPSSKQQQIWGQNY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29370			Kinase-related protein of unkn...		Lus10007339 [exp]	0	1
AT2G48160			Tudor/PWWP/MBT domain-containi...		Lus10042690 [exp]	2.8	0.8695
AT3G58570			P-loop containing nucleoside t...		Lus10030075 [exp]	3.7	0.8429
AT5G14610			DEAD box RNA helicase family p...		Lus10001272 [exp]	8.1	0.8517
AT3G63510			FMN-linked oxidoreductases sup...		Lus10016405 [exp]	8.5	0.8398
AT3G16290		EMB2083	embryo defective 2083, AAA-typ...		Lus10011432 [exp]	9.9	0.8372
AT3G17830			Molecular chaperone Hsp40/DnaJ...		Lus10031908 [exp]	10.1	0.8453
AT1G72040			P-loop containing nucleoside t...		Lus10008257 [exp]	10.8	0.8495
AT4G10070			KH domain-containing protein (...		Lus10002947 [exp]	11.2	0.8610
AT1G28530			unknown protein		Lus10015294 [exp]	12.0	0.8208
AT3G53320			unknown protein		Lus10023170 [exp]	12.6	0.8486

Compare expression of checked genes

Lus10007339 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.