Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42920 609 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G48910 444 / 7e-150 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 404 / 2e-134 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G06540 389 / 1e-128 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G08305 377 / 3e-125 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62890 371 / 2e-122 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18840 365 / 2e-120 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G29760 369 / 1e-119 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G56310 356 / 6e-117 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22410 360 / 8e-117 SLO1 SLOW GROWTH 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020764 [exp] 394 / 1e-136 AT2G42920 225 / 7e-71 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10030053 [exp] 412 / 3e-136 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 409 / 4e-136 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 403 / 6e-134 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014298 [exp] 402 / 2e-133 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024971 [exp] 385 / 5e-127 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010385 [exp] 376 / 1e-123 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002288 [exp] 372 / 7e-122 AT1G31430 689 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10004052 [exp] 366 / 8e-120 AT1G31430 684 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G202600 [exp] 753 / 0 AT2G42920 660 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.014G191200 [exp] 415 / 1e-138 AT5G48910 852 / 0.0 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G108500 [exp] 386 / 8e-129 AT4G18840 382 / 3e-127 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.003G031600 [exp] 390 / 2e-127 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G012600 [exp] 387 / 3e-127 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G073100 [exp] 382 / 3e-127 AT5G08305 600 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 386 / 4e-126 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G065500 [exp] 380 / 4e-125 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G106500 [exp] 375 / 8e-124 AT2G29760 422 / 4e-139 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G237000 [exp] 375 / 2e-123 AT5G66520 544 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10007341 pacid=23166214 polypeptide=Lus10007341 locus=Lus10007341.g ID=Lus10007341.BGIv1.0 annot-version=v1.0 ATGGCGTCAATTTCTTGCTCCCCATCGCCACCGCCGCCGTCAACCTCCATAGCGAAGTTCATCTCCGACCATCCATACCTCACAATGCTTGACACCAACT GCAAAACCATGCGAGACCTTCACAAACTCCACTGCCAGCTCATCAAAACCGGCGTAGCCAAGGACAGAATCGCCGCCAGCCGCGTCCTGGCCTTCTGCAC CTCCCCCGCCGGCGACGTCAACTACGCTTACTCTGTCTTCGCCCGCATCAAAAAGCCTACTCTCTTCTCCTGGAACCAGATCATCAAAGGCTTCTCTTAC AGCTCAACTCCTCAGATCGCAATCGCTCTGTTCGTCGAGATGTTGGCCGAGTCCTCAGTCCAGCCGTCGAGGCTCACTTACCCTTCGGTCTTCAAGGCAT ACGCTCAGCTAGGTTTCGTGCGTGAAGGAGCTCAGCTTCACGCCAGAGTGATCAAATCCGGGGACGAAGAAGATGAATTCGTAAGGAATAGCATCTTGTC TATGTACGCGAACTGTGGATTATTTACTGAAGCGAGAAGAGTGTTCGATAGGATCGATGGTAATAATCTGGAATCTGATCCGGTTCCTTGGAATGTAATG ATCACGGGGCTTGCAAAATGCGGTGAAATTGAACAGTCAAGGAAGGTGTTTGACGAAATGCCTCAAAGAAACGTGGTCTCCTGGAACTCGATGATAAGTG GATATGTCAGGATGGCGAAGTTCGCTGAAGCTCTGGAGCTTTTCGGAGAAATGCAAAGGGCGAAGGTTAAGCCGAGCGAATTCACAATGGTGAGTTTGCT CAATGCTTGTGCTTGCTTGGGAGCAATCAGGCAAGGGGAGTGGATCCATGATTACATTGTCAAGAACGGTTTCGAGCTGAACCCGATAGTTGTGACATCC ATCATCGATATGTATTCGAAATGCGGGAGCATAGACACGGCTCGAGAGGTCTTCGAGACTGCCGCTAAAAAGTCATTGTCGTGCTGGAACTCGATGATTC TAGGCCTGGCGACGAACGGTCATGAACAGGAAGCAATCCATCTCTTCGGAAAGATTTTGTCCTCGAATTTGGATCCTGATTTTGTCAGCTTCATCGGCGT CCTGACGGCTTGTAATCACGCCGGCTTGGTCGAAACGGCCAAGGAGTATTTCTCTTTGATGATAGAAACTTACAAGATCAAACCTTTGATACAGCATTAT AGCTGTATGGTCGATGTGCTTGGCCGAGCCGGGTTTCTGGAAGAAGCAGAAGAGCTCATCAAAGGGATGGCTATCAAACCAGATGCCATCATATGGGGAT CTTTGCTGTTTTCAAGCGAGATACACGGGAACTTGGAGATGGCAAAACGAGCAGCAGAGCACCTCAACGATTTGGATCCAAGCGGAACATCGAGCTTCAT TCTTATGTCGAATGTTCATGCTTCGTCCGGTCAGTTTCAGGAAGCGATCGAGCAGAGGGTTGTTCTGAAAGAAAACCGGGTTAAGAAAGTCCCCGGATGT AGTTCGATCGAACTGGACGGAGAAGTCCACGAGTTTGTAGCTGGCGGAAGTTTGCATCCAAAAGCTGGAAAGATTTACGACACCTTAGATGAACTTGGAT CGGTATTAAAGCAAACCGAATAG
AA sequence Show only first row Show all	>Lus10007341 pacid=23166214 polypeptide=Lus10007341 locus=Lus10007341.g ID=Lus10007341.BGIv1.0 annot-version=v1.0 MASISCSPSPPPPSTSIAKFISDHPYLTMLDTNCKTMRDLHKLHCQLIKTGVAKDRIAASRVLAFCTSPAGDVNYAYSVFARIKKPTLFSWNQIIKGFSY SSTPQIAIALFVEMLAESSVQPSRLTYPSVFKAYAQLGFVREGAQLHARVIKSGDEEDEFVRNSILSMYANCGLFTEARRVFDRIDGNNLESDPVPWNVM ITGLAKCGEIEQSRKVFDEMPQRNVVSWNSMISGYVRMAKFAEALELFGEMQRAKVKPSEFTMVSLLNACACLGAIRQGEWIHDYIVKNGFELNPIVVTS IIDMYSKCGSIDTAREVFETAAKKSLSCWNSMILGLATNGHEQEAIHLFGKILSSNLDPDFVSFIGVLTACNHAGLVETAKEYFSLMIETYKIKPLIQHY SCMVDVLGRAGFLEEAEELIKGMAIKPDAIIWGSLLFSSEIHGNLEMAKRAAEHLNDLDPSGTSSFILMSNVHASSGQFQEAIEQRVVLKENRVKKVPGC SSIELDGEVHEFVAGGSLHPKAGKIYDTLDELGSVLKQTE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42920			Pentatricopeptide repeat (PPR-...		Lus10007341 [exp]	0	1
AT3G42860			zinc knuckle (CCHC-type) famil...		Lus10012985 [exp]	1.7	0.9228
AT5G53840			F-box/RNI-like/FBD-like domain...		Lus10028721 [exp]	2.2	0.8943
AT2G27810		ATNAT12	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Lus10009402 [exp]	2.8	0.9042
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Lus10013858 [exp]	3.2	0.8902
AT2G47230		ATDUF6	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10004508 [exp]	4.2	0.8907
AT3G22430			unknown protein		Lus10041205 [exp]	4.9	0.8849
AT2G33700			Protein phosphatase 2C family ...		Lus10012244 [exp]	6.2	0.8766
AT2G27810		ATNAT12	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Lus10009401 [exp]	6.3	0.8750
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Lus10003675 [exp]	7.5	0.9005
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10007386 [exp]	8.1	0.8933

Compare expression of checked genes

Lus10007341 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.