Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30933 108 / 3e-28 Carbohydrate-binding X8 domain superfamily protein (.1.2) AT1G29380 95 / 1e-22 Carbohydrate-binding X8 domain superfamily protein (.1) AT1G09460 86 / 5e-19 Carbohydrate-binding X8 domain superfamily protein (.1) AT1G11820 81 / 5e-17 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G13600 78 / 7e-17 Carbohydrate-binding X8 domain superfamily protein (.1) AT5G55180 78 / 5e-16 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G05430 72 / 1e-15 Carbohydrate-binding X8 domain superfamily protein (.1) AT4G34480 75 / 3e-15 O-Glycosyl hydrolases family 17 protein (.1) AT3G58100 71 / 7e-15 PDCB5 plasmodesmata callose-binding protein 5 (.1) AT2G05790 73 / 2e-14 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020765 [exp] 278 / 5e-94 AT2G30933 169 / 4e-52 Carbohydrate-binding X8 domain superfamily protein (.1.2) Lus10004546 [exp] 105 / 2e-26 AT1G29380 175 / 2e-52 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10004600 [exp] 105 / 2e-26 AT1G29380 168 / 7e-50 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10001516 [exp] 103 / 4e-25 AT2G30933 143 / 3e-40 Carbohydrate-binding X8 domain superfamily protein (.1.2) Lus10015259 [exp] 100 / 6e-25 AT1G29380 143 / 4e-41 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10031443 [exp] 102 / 1e-24 AT2G30933 143 / 2e-40 Carbohydrate-binding X8 domain superfamily protein (.1.2) Lus10025379 [exp] 94 / 1e-22 AT1G29380 140 / 1e-39 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10032601 [exp] 79 / 1e-17 AT4G13600 167 / 2e-52 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10015151 [exp] 79 / 1e-16 AT2G05790 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G059600 [exp] 145 / 2e-42 AT2G30933 164 / 5e-50 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.005G202400 [exp] 136 / 1e-38 AT2G30933 140 / 1e-40 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.001G353400 [exp] 112 / 5e-29 AT1G29380 144 / 1e-40 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.011G078500 [exp] 101 / 6e-25 AT1G29380 154 / 1e-44 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.005G003500 [exp] 96 / 2e-22 AT2G30933 142 / 1e-38 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.013G003500 [exp] 96 / 4e-22 AT1G09460 144 / 3e-38 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.007G111000 [exp] 81 / 1e-18 AT4G05430 148 / 5e-46 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.019G007800 [exp] 79 / 8e-18 AT4G05430 160 / 4e-51 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.019G012000 [exp] 79 / 9e-18 AT4G05430 155 / 3e-49 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.001G315700 [exp] 79 / 2e-17 AT4G13600 155 / 2e-47 Carbohydrate-binding X8 domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10007342 pacid=23166237 polypeptide=Lus10007342 locus=Lus10007342.g ID=Lus10007342.BGIv1.0 annot-version=v1.0 ATGGGTATTGGGAGAGCTCTCATGTGTTGTCTGATAATCTTCTTCTCTGCTCCTCCCACTCTCTCCCTTTCTGCAGGTCGGAGTAGAATCTCGACAATCC CATCAGCCAAACAAGAGAAAACGGTTCCCGATTTCCGCATCAGCCGAAAAGATATCACGGCTCCGATCACCACTGTACCCATAATCACTCCGGCGACCAC CGCGAATCCAGTCCCGCCGTCGGATACATCAATCATCAACCCCAATTCAGACCCCGATTCTTCCGCTCCGACAATAACTCCGACGGCTGCAGGAGCAACC TCCTCCTCGTCGGCGTCGTTGCCGGGAGCGAGCTGGTGCGTGGCGAGCCAGGGCGCGTCGACGAAGGCTCTGCAGGTGGCGCTGGATTACGCGTGCGGGT ACGGAGGAGCGGATTGCGGCGGGATCCAGCCGGCGGGGAGCTGCTACAACCCGAACACGATCAGGGACCACGCTTCGTATGCGTTCAACAATTATTACCA GAAGAATCCTTTGCCTACCAGCTGTAATTTTGGTGGCACCGCTGTTATCACCAGCACTAATCCAAGCACAGGGACATGTAAGCTTCCATCAACGAGTACA AGCTCGTCAGTACTGAACACCACCAACTCAAATGGCGCCACTGTCTTTGGTGCAGTACCTACTGGCCCTGCTTCCCCATTCTCAACCTCATCCTCATCGT TGTCGTCTTCTTCGAACCAACGATATCTCGTCGTCCTCTCCGCGATTGGACCTCTCATGTATGGCTTGCTTTTGACTGTGCGGGTGAATCGATTAGAAGA GCATGACTATGTTGTATGA
AA sequence Show only first row Show all	>Lus10007342 pacid=23166237 polypeptide=Lus10007342 locus=Lus10007342.g ID=Lus10007342.BGIv1.0 annot-version=v1.0 MGIGRALMCCLIIFFSAPPTLSLSAGRSRISTIPSAKQEKTVPDFRISRKDITAPITTVPIITPATTANPVPPSDTSIINPNSDPDSSAPTITPTAAGAT SSSSASLPGASWCVASQGASTKALQVALDYACGYGGADCGGIQPAGSCYNPNTIRDHASYAFNNYYQKNPLPTSCNFGGTAVITSTNPSTGTCKLPSTST SSSVLNTTNSNGATVFGAVPTGPASPFSTSSSSLSSSSNQRYLVVLSAIGPLMYGLLLTVRVNRLEEHDYVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30933			Carbohydrate-binding X8 domain...		Lus10007342 [exp]	0	1
AT2G30933			Carbohydrate-binding X8 domain...		Lus10020765 [exp]	1.0	0.8837
AT4G35920		MCA1	mid1-complementing activity 1,...		Lus10041875 [exp]	2.8	0.8559
AT3G50780			unknown protein		Lus10022484 [exp]	4.9	0.8176
AT5G54300			Protein of unknown function (D...		Lus10018444 [exp]	5.7	0.7634
AT3G52900			Family of unknown function (DU...		Lus10043423 [exp]	6.0	0.8001
AT4G38660			Pathogenesis-related thaumatin...		Lus10025055 [exp]	12.5	0.8023
AT2G23140			RING/U-box superfamily protein...		Lus10022919 [exp]	15.0	0.8003
					Lus10006886 [exp]	16.4	0.7413
AT3G11590			unknown protein		Lus10017001 [exp]	17.2	0.7824
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10018674 [exp]	17.2	0.7812

Compare expression of checked genes

Lus10007342 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.