Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020766 [exp] 71 / 5e-16 AT4G21610 133 / 3e-40 lsd one like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G043100 [exp] 53 / 3e-09 AT4G21610 131 / 7e-40 lsd one like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06943 [flax] [poplar] zf-LSD1 LSD1 zinc finger
Representative CDS sequence Show only first row Show all	>Lus10007343 pacid=23166249 polypeptide=Lus10007343 locus=Lus10007343.g ID=Lus10007343.BGIv1.0 annot-version=v1.0 ATGGAGAACGTATCAGAATCTATGGAGGATATCGAACCACCACCTCCGGGGTGGGAATCGATCCCCCCGTCCCAGCCATCGCTGCAACCTGCTGCTCTCC CGGCGCCGCAATCGATTTCCCCGTCACAGCCATCCGAACAACCTACTACTCTTCCTCCACCGCCGTCTTCCCCGCCGGCGTTACCCCAACTTCAGCCACA ATCAGCTCATGAAGTTGGACTTGTTAACTGTGGTAGCTGTCCTACTCTGCTTATGTACCCTTATGGATCCACCTCAGTTAGTTGCTCATCTTGCCAGTCG GTGACAGAAATTGGAACTAATACCTACATGATCTGTCATGATGTTATTGATTATTTCATTTTAACCATTACGATTGAACAAAGGTTGACTGTGGTTCACG CATCTTCTGTGCAGGAACATAATCAACGTCCACCATGGTCTGTGATACAAGGACACCCTAACATTGTTCACTGA
AA sequence Show only first row Show all	>Lus10007343 pacid=23166249 polypeptide=Lus10007343 locus=Lus10007343.g ID=Lus10007343.BGIv1.0 annot-version=v1.0 MENVSESMEDIEPPPPGWESIPPSQPSLQPAALPAPQSISPSQPSEQPTTLPPPPSSPPALPQLQPQSAHEVGLVNCGSCPTLLMYPYGSTSVSCSSCQS VTEIGTNTYMICHDVIDYFILTITIEQRLTVVHASSVQEHNQRPPWSVIQGHPNIVH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21610		LOL2	lsd one like 2 (.1)		Lus10007343 [exp]	0	1
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10018191 [exp]	6.1	0.8886
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Lus10004301 [exp]	6.9	0.8749
AT5G19580			glyoxal oxidase-related protei...		Lus10011109 [exp]	11.6	0.8370
AT5G26749			C2H2 and C2HC zinc fingers sup...		Lus10001520 [exp]	13.0	0.8620
AT5G01910			unknown protein		Lus10022734 [exp]	13.3	0.8777
AT1G80660		AHA9	H\(+\)-ATPase 9, H\(+\)-ATPase...		Lus10002326 [exp]	17.0	0.8653
AT4G37090			unknown protein		Lus10000742 [exp]	17.7	0.8584
AT1G19990			unknown protein		Lus10033141 [exp]	17.7	0.8733
AT4G10630			Glutaredoxin family protein (....		Lus10008270 [exp]	21.9	0.8721
AT4G22860			Cell cycle regulated microtubu...		Lus10007022 [exp]	24.0	0.8559

Compare expression of checked genes

Lus10007343 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.