Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06520 232 / 5e-70 ATGPAT1, GPAT1 glycerol-3-phosphate acyltransferase 1 (.1) AT1G01610 206 / 6e-61 ATGPAT4, GPAT4 glycerol-3-phosphate acyltransferase 4 (.1) AT2G38110 201 / 3e-59 ATGPAT6, GPAT6 glycerol-3-phosphate acyltransferase 6 (.1) AT4G00400 200 / 1e-58 AtGPAT8, GPAT8 glycerol-3-phosphate acyltransferase 8 (.1) AT1G02390 200 / 2e-58 ATGPAT2, GPAT2 ARABIDOPSIS THALIANA GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2, glycerol-3-phosphate acyltransferase 2 (.1) AT3G11430 198 / 7e-58 ATGPAT5, GPAT5 glycerol-3-phosphate acyltransferase 5 (.1) AT4G01950 197 / 2e-57 ATGPAT3, GPAT3 glycerol-3-phosphate acyltransferase 3 (.1) AT5G06090 192 / 1e-55 ATGPAT7, GPAT7 glycerol-3-phosphate acyltransferase 7 (.1) AT3G11325 163 / 9e-46 Phospholipid/glycerol acyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020767 [exp] 372 / 8e-125 AT1G06520 569 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10017794 [exp] 292 / 1e-94 AT3G11430 392 / 5e-133 glycerol-3-phosphate acyltransferase 5 (.1) Lus10018832 [exp] 287 / 9e-93 AT3G11430 390 / 3e-132 glycerol-3-phosphate acyltransferase 5 (.1) Lus10010934 [exp] 256 / 3e-79 AT1G06520 605 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10031396 [exp] 247 / 1e-75 AT1G06520 595 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10002421 [exp] 202 / 2e-59 AT4G01950 514 / 2e-179 glycerol-3-phosphate acyltransferase 3 (.1) Lus10036684 [exp] 202 / 3e-59 AT2G38110 558 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10010741 [exp] 202 / 3e-59 AT2G38110 555 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10004711 [exp] 193 / 4e-56 AT3G11430 743 / 0.0 glycerol-3-phosphate acyltransferase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G202200 [exp] 242 / 4e-74 AT1G06520 650 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Potri.002G192600 [exp] 212 / 1e-62 AT4G01950 601 / 0.0 glycerol-3-phosphate acyltransferase 3 (.1) Potri.008G058200 [exp] 199 / 2e-58 AT5G06090 704 / 0.0 glycerol-3-phosphate acyltransferase 7 (.1) Potri.010G201200 [exp] 199 / 2e-58 AT3G11430 720 / 0.0 glycerol-3-phosphate acyltransferase 5 (.1) Potri.014G085500 [exp] 198 / 4e-58 AT4G00400 757 / 0.0 glycerol-3-phosphate acyltransferase 8 (.1) Potri.016G113100 [exp] 196 / 3e-57 AT2G38110 789 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.006G097800 [exp] 195 / 9e-57 AT2G38110 809 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.016G063900 [exp] 189 / 2e-54 AT2G38110 533 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.006G198100 [exp] 186 / 1e-53 AT2G38110 527 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007344 pacid=23166200 polypeptide=Lus10007344 locus=Lus10007344.g ID=Lus10007344.BGIv1.0 annot-version=v1.0 ATGGTGTTTCATCTATACAGACTTGCAGAATGGATTGTATACCAGCTGCTTGCAAACTCCTTCTACAGAGCTGCCAAAAAAGCCAGAACCTTTGCATACT ACTTCCGCCTCAGAAACAACAACCCTTCTCCCAAGTCCAAGCAGCACCATGTAGCATCACCAGGAAGCAAAGAAATCAACACATTGCTCCGGACTGATTC CTTCTTCCCTTACTTCATGCTGGTCGCCTTCGAAGGCGGCAGCATTCTGAGGGCGTTCTTGCTTCTCGTTTCTTATCCGGTCGTTTGGTTTCTGGACTAC GAATCGCAGCTGAAAGCCATGATCTTTATCACTTTCTGTGGGCTTAAAGTTAAGGACATGGAAAGTGTTTCCAGAGCTGTCCTTCCGAAATTCTACCTAG AAAACCTCCACTTCCAGGCTTATAACCAGCTTATTGCTTCTTCTTCGAATTCGAATTCGAAAGCTGTTGTGATCACCGGTGTTCCTAGAGTCATGGTGGA GGTGTTCCTCAAGGAGTATTTGGGCGTCGAGAATGTCATCGGAACCGAGCTGAGCCAAGTTTCTGGAAAAGGCAGCAGCAGTAGTTACTTCACTGGGTTT GTGTCTGGGAACCTTGACGTTGGAATTGGGTGTTCTTCATCAGACCATCTCTTCCTTTCCTTCTGTAAGGCTGGCGTTTCTCCCGACTCCGTCGGAAACT ATAGCAATGTTCTGTTGGATTCCGATTGGAATTCTCCTCGCCGTCTTCCGCCTACTCGCCGGAATCCTCCTCCCGTACAAGATCGCTTTACTCCTCGCCA GAATGAGCGGCGTACGGCACCCAACAGCATGAGCAAGTTGTCGAGGCTAATCGCCCCGATCAGGACGGTTCGCCTGACCCGGGACCGGACCCGAGACGGA GAGACGATGGAGAGGATGCTACGCGAAGGGGATCTGGTGGTCTGCCCTGAAGGGACAACATGCCGGGAGCCGTACTTGCTCCGGTTCAGCTCGCTGTTCG CCGAGCTGAGCGACGAGATTGTTCCGGTGGCGGTGAATACTTCGGTGGGGATGTTCTACGGGACGACGGCTAGCGGGCTGAAATGGTTGGACCCGATTTT CTTCCTCATGAACCCTCGCCCGGTTTACTGGATCAGGGTGCTGGAGAAGCTGCCGGCGGAGATGACTTGCGGCGGCGGAGGGAAGTCCAGCTGGGACGTA GCGAATTACATACAGAAGCAGCTCGCCGGAGCTTTGGGGTTTGAGTGCACGTCGCTTACTAGGAAGGATAAGTACTTGATGCTTGCTGGTAATGAAGGGA TCGTTGAACGTCGATGA
AA sequence Show only first row Show all	>Lus10007344 pacid=23166200 polypeptide=Lus10007344 locus=Lus10007344.g ID=Lus10007344.BGIv1.0 annot-version=v1.0 MVFHLYRLAEWIVYQLLANSFYRAAKKARTFAYYFRLRNNNPSPKSKQHHVASPGSKEINTLLRTDSFFPYFMLVAFEGGSILRAFLLLVSYPVVWFLDY ESQLKAMIFITFCGLKVKDMESVSRAVLPKFYLENLHFQAYNQLIASSSNSNSKAVVITGVPRVMVEVFLKEYLGVENVIGTELSQVSGKGSSSSYFTGF VSGNLDVGIGCSSSDHLFLSFCKAGVSPDSVGNYSNVLLDSDWNSPRRLPPTRRNPPPVQDRFTPRQNERRTAPNSMSKLSRLIAPIRTVRLTRDRTRDG ETMERMLREGDLVVCPEGTTCREPYLLRFSSLFAELSDEIVPVAVNTSVGMFYGTTASGLKWLDPIFFLMNPRPVYWIRVLEKLPAEMTCGGGGKSSWDV ANYIQKQLAGALGFECTSLTRKDKYLMLAGNEGIVERR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10007344 [exp]	0	1
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10000676 [exp]	1.4	0.8896
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10020767 [exp]	1.4	0.9387
AT2G23910			NAD(P)-binding Rossmann-fold s...		Lus10003780 [exp]	7.3	0.8449
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Lus10011031 [exp]	12.7	0.8493
AT5G42020		BIP2, BIP	luminal binding protein, Heat ...		Lus10007778 [exp]	14.4	0.8763
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10010874 [exp]	15.2	0.8602
AT4G15550		IAGLU	indole-3-acetate beta-D-glucos...		Lus10019989 [exp]	16.4	0.8775
AT4G38080			hydroxyproline-rich glycoprote...		Lus10033360 [exp]	16.9	0.8739
AT2G36890	MYB	BIT1, ATMYB38, ...	REGULATOR OF AXILLARY MERISTEM...		Lus10026543 [exp]	17.1	0.8638
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10029453 [exp]	21.4	0.8479

Compare expression of checked genes

Lus10007344 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.