Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42910 572 / 0 Phosphoribosyltransferase family protein (.1) AT1G10700 486 / 9e-173 PRS3 phosphoribosyl pyrophosphate (PRPP) synthase 3 (.1) AT2G44530 77 / 1e-15 Phosphoribosyltransferase family protein (.1.2) AT2G35390 76 / 2e-15 Phosphoribosyltransferase family protein (.1.2.3) AT1G32380 74 / 2e-14 PRS2 phosphoribosyl pyrophosphate (PRPP) synthase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020768 [exp] 631 / 0 AT2G42910 582 / 0.0 Phosphoribosyltransferase family protein (.1) Lus10031395 [exp] 608 / 0 AT2G42910 578 / 0.0 Phosphoribosyltransferase family protein (.1) Lus10010935 [exp] 602 / 0 AT2G42910 572 / 0.0 Phosphoribosyltransferase family protein (.1) Lus10006202 [exp] 479 / 3e-170 AT1G10700 577 / 0.0 phosphoribosyl pyrophosphate (PRPP) synthase 3 (.1) Lus10036849 [exp] 478 / 6e-170 AT1G10700 577 / 0.0 phosphoribosyl pyrophosphate (PRPP) synthase 3 (.1) Lus10012074 [exp] 80 / 2e-16 AT2G44530 605 / 0.0 Phosphoribosyltransferase family protein (.1.2) Lus10040098 [exp] 77 / 2e-15 AT2G35390 639 / 0.0 Phosphoribosyltransferase family protein (.1.2.3) Lus10030948 [exp] 66 / 6e-12 AT2G35390 613 / 0.0 Phosphoribosyltransferase family protein (.1.2.3) Lus10027908 [exp] 62 / 2e-10 AT2G44530 555 / 0.0 Phosphoribosyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G059700 [exp] 568 / 0 AT2G42910 575 / 0.0 Phosphoribosyltransferase family protein (.1) Potri.005G202100 [exp] 557 / 0 AT2G42910 565 / 0.0 Phosphoribosyltransferase family protein (.1) Potri.010G045000 [exp] 496 / 1e-176 AT1G10700 566 / 0.0 phosphoribosyl pyrophosphate (PRPP) synthase 3 (.1) Potri.001G145700 [exp] 84 / 5e-18 AT2G35390 657 / 0.0 Phosphoribosyltransferase family protein (.1.2.3) Potri.003G088400 [exp] 81 / 7e-17 AT2G35390 655 / 0.0 Phosphoribosyltransferase family protein (.1.2.3) Potri.014G179600 [exp] 80 / 2e-16 AT2G44530 628 / 0.0 Phosphoribosyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0533 [flax] [poplar] PRTase-like PF00156 [flax] [poplar] Pribosyltran Phosphoribosyl transferase domain
Representative CDS sequence Show only first row Show all	>Lus10007345 pacid=23166191 polypeptide=Lus10007345 locus=Lus10007345.g ID=Lus10007345.BGIv1.0 annot-version=v1.0 ATGGAAGCCAATGCAAACTCAAACTCCAACTCAGTGGTGCAGAAGAAGCAGCAGCCAGCAAAGAAGCAAGTCCTTCTGTTTTACTGCCTAGAGTGCGAAG AGCTTGCTCGTAAGGTCGCCGCCAATTCTGACCTCGTCACCCTTCAATCCATCAACTGGAGGAGTTTCGAGGATGGGTTCCCGAACCTATACATAAACAA TGCACATGATATAAGAGGTCAACATGTGGCCTTTCTGGCTTCCTTCAGTTCACCAGCAGTCATCTTTGAGCAGCTCTCCGTCATATATGCACTTCCGCGT CTCTTTGTCGCTTCCTTCTCGTTGGTGCTGCCTTTCTTCCCAACTGCTACCTTTGAGCGAATGGATGAAGAAGGGGATGTCGCGACAGCGTTCACCTTGG CCAAAATCTTGTCGAATATTCCCATTTCAAGAGGCGGTCCCACTAGTTTAGTCATCTATGATATACATGCTCTACAGGAAAGATTTTACTTTGGGGACCA TGTATTGCCTTTGTTTGAGACTGGGATTCCTTTGTTATTGCAACGCCTCAATCAGCTACCTGATTCTGATAAGATTGTTATTGCTTTTCCTGATGATGGA GCTTGGAAGCGATTCCACAAGATGTTGGATCATTATCCAACTGTGGTCTGCAACAAAGTTCGTGAAGGCGATAAGAGGATAGTTAGGATCAAGGAAGGAA ACCCTTCTGGTTGTCATGTGGTCATTGTTGATGATCTGGTGCAATCTGGCGGTACCCTAATCGAGTGCCAGAAAGTTCTGGCAGCTCATGGTGCAACAAA AGTAAGTGCCTATGTCACTCACGGTGTGTTTCCTAAGAGATCTTGGGAGCGATTCGCCCACAAGAATATCGGTTTGGAGAAAGCATTTACCTACTTCTGG ATTACTGATTCTTGCCCTGGAACTGTTAAAGCCGTAGCAAACAAAGCTCCATTTGAAGTCCTCAGTCTTGCTGGATCAATTGCTGATTCTCTCAAAATCT AG
AA sequence Show only first row Show all	>Lus10007345 pacid=23166191 polypeptide=Lus10007345 locus=Lus10007345.g ID=Lus10007345.BGIv1.0 annot-version=v1.0 MEANANSNSNSVVQKKQQPAKKQVLLFYCLECEELARKVAANSDLVTLQSINWRSFEDGFPNLYINNAHDIRGQHVAFLASFSSPAVIFEQLSVIYALPR LFVASFSLVLPFFPTATFERMDEEGDVATAFTLAKILSNIPISRGGPTSLVIYDIHALQERFYFGDHVLPLFETGIPLLLQRLNQLPDSDKIVIAFPDDG AWKRFHKMLDHYPTVVCNKVREGDKRIVRIKEGNPSGCHVVIVDDLVQSGGTLIECQKVLAAHGATKVSAYVTHGVFPKRSWERFAHKNIGLEKAFTYFW ITDSCPGTVKAVANKAPFEVLSLAGSIADSLKI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42910			Phosphoribosyltransferase fami...		Lus10007345 [exp]	0	1
AT2G42910			Phosphoribosyltransferase fami...		Lus10020768 [exp]	5.1	0.9680
AT3G48320		CYP71A21	"cytochrome P450, family 71, s...		Lus10043311 [exp]	9.3	0.9760
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Lus10030531 [exp]	13.0	0.9756
AT1G47530			MATE efflux family protein (.1...		Lus10042344 [exp]	13.4	0.9724
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10001322 [exp]	17.6	0.9750
AT3G26230		CYP71B24	"cytochrome P450, family 71, s...		Lus10019461 [exp]	17.7	0.9743
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10011346 [exp]	19.9	0.9736
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10005858 [exp]	22.5	0.9739
AT5G45340		CYP707A3	"cytochrome P450, family 707, ...		Lus10033308 [exp]	23.7	0.9661
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10033889 [exp]	23.8	0.9688

Compare expression of checked genes

Lus10007345 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.