Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06530 83 / 7e-18 PMD2 peroxisomal and mitochondrial division factor 2, Tropomyosin-related (.1) AT3G58840 69 / 4e-13 PMD1 peroxisomal and mitochondrial division factor 1, Tropomyosin-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020770 [exp] 340 / 4e-117 AT1G06530 147 / 6e-42 peroxisomal and mitochondrial division factor 2, Tropomyosin-related (.1) Lus10010937 [exp] 184 / 7e-56 AT3G58840 140 / 3e-39 peroxisomal and mitochondrial division factor 1, Tropomyosin-related (.1.2) Lus10031394 [exp] 181 / 7e-55 AT1G06530 130 / 1e-35 peroxisomal and mitochondrial division factor 2, Tropomyosin-related (.1) Lus10013266 [exp] 80 / 2e-18 ND / Lus10030789 [exp] 68 / 6e-14 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G060200 [exp] 150 / 4e-43 AT1G06530 91 / 5e-21 peroxisomal and mitochondrial division factor 2, Tropomyosin-related (.1) Potri.005G201400 [exp] 138 / 1e-38 AT1G06530 144 / 8e-41 peroxisomal and mitochondrial division factor 2, Tropomyosin-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007347 pacid=23166250 polypeptide=Lus10007347 locus=Lus10007347.g ID=Lus10007347.BGIv1.0 annot-version=v1.0 ATGTCAGACGATAAGGCAACTTCTCGGACGAACGGCGTCACAGCTGAGGAGGATCAGGAGGTGGTGGTGACCTTCGACAGCACTGACCGCGGGGACGGCG GCGAAGCGAAGCTGAAGCAGAGGATTGAATTCTTGGAGCGCCAGAACGGGTCGTTGATTCAGGAGAACGATGAGTACAAGGATCAGATTTCGAAGTTGGA GGGGGAGCTTGAGTCGCTGAAATCGGAGGAATCCGAGATCATGTATAGACTCGAAGAGATGGAGAACGAGTTAGAGGAGTCGGAAGAGACCAAGAGAACT CTAGATTCAATAGCGGCTAGAGCCAGCGAGCTCGAGACAGAAGTTTCCAGGCTCCAGCATGATCTCATTACTTCGATGAGCCAAGGAGACGAGTACAGTA CTGAGATTGAGGAGCTGAGGAGGGTGGTGGGAGATATGGAGGTGAAACTGGAGGAAGCCAAGAAGGAGAAGGCAGATTACGAGAAGAGAGTGAGGGAATT GGAGAGGAAAGTCGGGGTTCTTGAGGTGAAGGAGATTGAGGAGAAGAGTAAGAAAATCAGACAGGAAGAGGAGACGAGGGAGAGAATCTCCGAGAAAAAT AAGGAGCTGGACAAATACAAGAAGATTGTGGAGGATTTGGAGGAGGAGTTGGCTGTTAAGTCTGAAATGGAGGAGAGGTTGATTGCCTCTGAAAACAGGA CCAGAGACCTCGAAATGAAGATGGTGGGTCTGCAGAAGAAAGCGGAGGAGGCTGAGAAGGTCATCGTTGGGATGAAGCAGACGGCTGTTGAAACCATTAA GGGCATTGATCATGAAGAGGATGAAGATAGTGAAGATAAAGAAGAATCCGTTCTGCACTGGCCGATGGTGGTTATCGCATCTTCTGGCGTTGTTGCCGTT GCAGCTGCAGTGGCCTATCTCTTCTATGGAAGGACACATTGA
AA sequence Show only first row Show all	>Lus10007347 pacid=23166250 polypeptide=Lus10007347 locus=Lus10007347.g ID=Lus10007347.BGIv1.0 annot-version=v1.0 MSDDKATSRTNGVTAEEDQEVVVTFDSTDRGDGGEAKLKQRIEFLERQNGSLIQENDEYKDQISKLEGELESLKSEESEIMYRLEEMENELEESEETKRT LDSIAARASELETEVSRLQHDLITSMSQGDEYSTEIEELRRVVGDMEVKLEEAKKEKADYEKRVRELERKVGVLEVKEIEEKSKKIRQEEETRERISEKN KELDKYKKIVEDLEEELAVKSEMEERLIASENRTRDLEMKMVGLQKKAEEAEKVIVGMKQTAVETIKGIDHEEDEDSEDKEESVLHWPMVVIASSGVVAV AAAVAYLFYGRTH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58840		PMD1	peroxisomal and mitochondrial ...		Lus10007347 [exp]	0	1
AT4G38220		AQI	aquaporin interactor, Peptidas...		Lus10013848 [exp]	1.7	0.8977
AT1G66130			NAD(P)-binding Rossmann-fold s...		Lus10039898 [exp]	5.3	0.8747
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Lus10026198 [exp]	7.5	0.8713
AT4G34120		CBSX2, CDCP1, L...	LOSS OF THE TIMING OF ET AND J...		Lus10002834 [exp]	7.5	0.8716
AT5G10550		GTE2	global transcription factor gr...		Lus10020471 [exp]	8.2	0.8219
AT3G15360		ATHM4, ATM4, TR...	ARABIDOPSIS THIOREDOXIN M-TYPE...		Lus10040887 [exp]	8.9	0.8568
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Lus10021234 [exp]	9.2	0.8462
AT1G61667			Protein of unknown function, D...		Lus10020075 [exp]	11.8	0.8497
AT4G03600			unknown protein		Lus10039834 [exp]	12.0	0.8548
AT1G55805			BolA-like family protein (.1)		Lus10002318 [exp]	12.4	0.8241

Compare expression of checked genes

Lus10007347 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.