Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23730 358 / 7e-125 XTH16 xyloglucan endotransglucosylase/hydrolase 16 (.1) AT4G14130 352 / 9e-123 XTR7, XTH15 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) AT5G57560 348 / 2e-121 XTH22, TCH4 xyloglucan endotransglucosylase/hydrolase 22, Touch 4, Xyloglucan endotransglucosylase/hydrolase family protein (.1) AT4G25810 343 / 3e-119 XTH23, XTR6 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) AT4G30270 332 / 3e-115 XTH24, SEN4, BRU1, MERI-5, MERI5B SENESCENCE 4, meristem-5, MERISTEM 5, xyloglucan endotransglucosylase/hydrolase 24 (.1) AT5G57550 332 / 1e-114 XTR3, XTH25, EXGT-A5 xyloglucan endotransglycosylase 3, xyloglucan endotransglucosylase/hydrolase 25 (.1) AT5G57530 324 / 1e-111 AtXTH12, XTH12 xyloglucan endotransglucosylase/hydrolase 12 (.1) AT5G57540 322 / 5e-111 AtXTH13, XTH13 xyloglucan endotransglucosylase/hydrolase 13 (.1) AT2G18800 314 / 2e-107 ATXTH21, XTH21, XTR17 xyloglucan endotransglucosylase/hydrolase 21 (.1) AT5G48070 310 / 3e-106 XTH20, ATXTH20 xyloglucan endotransglucosylase/hydrolase 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020772 [exp] 486 / 1e-175 AT3G23730 393 / 7e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10020773 [exp] 484 / 1e-174 AT3G23730 394 / 4e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10010938 [exp] 426 / 9e-152 AT4G14130 386 / 3e-136 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Lus10007348 [exp] 431 / 1e-151 AT3G23730 355 / 2e-121 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10010936 [exp] 426 / 1e-151 AT3G23730 382 / 2e-134 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10010939 [exp] 423 / 7e-151 AT3G23730 384 / 2e-135 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10031393 [exp] 422 / 2e-150 AT3G23730 388 / 8e-137 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10031392 [exp] 419 / 2e-149 AT3G23730 384 / 3e-135 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10034098 [exp] 414 / 2e-147 AT3G23730 376 / 5e-132 xyloglucan endotransglucosylase/hydrolase 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G060500 [exp] 402 / 2e-142 AT4G14130 424 / 3e-151 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.005G201250 [exp] 397 / 1e-140 AT4G14130 395 / 2e-139 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.005G201200 [exp] 395 / 2e-139 AT4G14130 405 / 2e-143 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.002G060400 [exp] 389 / 2e-137 AT4G14130 402 / 2e-142 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.014G146100 [exp] 383 / 4e-135 AT3G23730 451 / 1e-161 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.002G236200 [exp] 377 / 1e-132 AT3G23730 436 / 1e-155 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.011G077320 [exp] 360 / 9e-126 AT3G23730 386 / 7e-136 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.013G005700 [exp] 356 / 1e-123 AT4G25810 431 / 5e-153 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.018G095100 [exp] 350 / 3e-122 AT4G25810 420 / 1e-149 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.018G095200 [exp] 347 / 5e-121 AT4G25810 414 / 3e-147 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10007349 pacid=23166255 polypeptide=Lus10007349 locus=Lus10007349.g ID=Lus10007349.BGIv1.0 annot-version=v1.0 ATGGCTGCCGTTCTTCCTTGGGTCACATTGTTGCTATTGGGTCATCTACTAACAATCTCAGAAGCCAACTTCAACCAACAGTTCGATATCACGTTCGGAG ATCAACGCGCCCAGATTCAAAACGGAGGCCAACAACTCACTCTCTCGCTGGACAAGTTCTCAGGTTCCGGATTCAAGTCCAAGAGCGAGTACCTCTTCGG CCGCATCGATATGCAGATCAAGCTCGTCGCAGGCAACTCTGCTGGCACCGTCACCACTTTCTACTTGTCCTCCGAAGGAGCAAACCACGACGAGATCGAC TTCGAATTCCTAGGGAACTCATCGGGCGATCCGTACCTTATCCATACAAATGTGTTCGCGCAGGGGAAGGGAAACAGAGAACAACAATTCTATCTCTGGT TTGACCCAACCTCTGCTTTCCACACTTACACCATCCTCTGGAATCCCCAACGAATCATATTCTTGGTGGACAACATACCGTTGAGGGTGCACAATAACCT GGAATCAAAGGGAGTGCCGTACCCAAACAAGCAGCCGATGAAGATATACTCGAGTCTATGGAATGCGGATGACTGGGCGACTCAAGGCGGACGAGTGAAG ACTGACTGGACCAAAGCTCCTTTCGTGGCTTCGTACAGGAACTTCAGGGCTGATGCATGCGTTTGGTCCTCTGGTGCTTCTTCTTGTGGTTCATCTTCTG GAAATGGGTTGCAGAATGGAGCTTGGCAGACTCAGGATTTGGATGCTGCCGGAAGGAATAGGCTCCGCTGGGTGCAGAGCAAGTATCTTGTTTACAACTA TTGTACAGATTTCAAGCGATTTCCTCAGGGCTTGCCCATTGAGTGTTCGCGGTGA
AA sequence Show only first row Show all	>Lus10007349 pacid=23166255 polypeptide=Lus10007349 locus=Lus10007349.g ID=Lus10007349.BGIv1.0 annot-version=v1.0 MAAVLPWVTLLLLGHLLTISEANFNQQFDITFGDQRAQIQNGGQQLTLSLDKFSGSGFKSKSEYLFGRIDMQIKLVAGNSAGTVTTFYLSSEGANHDEID FEFLGNSSGDPYLIHTNVFAQGKGNREQQFYLWFDPTSAFHTYTILWNPQRIIFLVDNIPLRVHNNLESKGVPYPNKQPMKIYSSLWNADDWATQGGRVK TDWTKAPFVASYRNFRADACVWSSGASSCGSSSGNGLQNGAWQTQDLDAAGRNRLRWVQSKYLVYNYCTDFKRFPQGLPIECSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10007349 [exp]	0	1
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10020772 [exp]	1.0	0.9742
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10007348 [exp]	2.0	0.9393
AT5G01380	Trihelix		Homeodomain-like superfamily p...		Lus10004806 [exp]	3.2	0.8681
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Lus10021370 [exp]	3.5	0.9036
AT4G17140			pleckstrin homology (PH) domai...		Lus10003381 [exp]	6.0	0.8749
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Lus10017050 [exp]	6.3	0.9031
AT5G39670			Calcium-binding EF-hand family...		Lus10007536 [exp]	7.5	0.8779
AT5G18150			Methyltransferase-related prot...		Lus10034423 [exp]	8.1	0.9037
AT1G15380		GLYI4	glyoxylase I 4, Lactoylglutath...		Lus10025971 [exp]	10.5	0.8677
AT4G14130		XTR7, XTH15	xyloglucan endotransglycosylas...		Lus10010938 [exp]	10.6	0.8756

Compare expression of checked genes

Lus10007349 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.