Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58830 336 / 2e-114 haloacid dehalogenase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020774 [exp] 672 / 0 AT3G58830 341 / 2e-116 haloacid dehalogenase (HAD) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G060600 [exp] 387 / 2e-134 AT3G58830 354 / 9e-122 haloacid dehalogenase (HAD) superfamily protein (.1) Potri.005G201100 [exp] 369 / 5e-129 AT3G58830 340 / 3e-118 haloacid dehalogenase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF09419 [flax] [poplar] PGP_phosphatase Mitochondrial PGP phosphatase
Representative CDS sequence Show only first row Show all	>Lus10007350 pacid=23166236 polypeptide=Lus10007350 locus=Lus10007350.g ID=Lus10007350.BGIv1.0 annot-version=v1.0 ATGCATTCCGCCTCTGCAATTCTCTGGCCGCCGGTCTGCCATTGCCCCAATAATCCATCGTTCATCACTGATTCCAATCTTAAGCTAAAGCCGTCGTTTT TACCGTTTCCCCAGCGCCATAATTCGTTCAGGAAGCTCTGCTCCCTCGCCGCTGTTCACCCAACCAACAATCGGGACAGCGGTGAGTCGTCGGGTCAGTG CGGGAGCAGCAGGGAGTTGTCACGGTCCTATTCGGTGCTGGACGATTTCCGCGATTCGATTCGGTTTAACGGGTTCGCTTACAACAACCCACAAGACGAA ACCGAGGAACCAGGCCGAGGGAGGGAAGAGATTGGTGGTGAGTTCGAGGTGCCGCCTGTTCACAGAGGACTTTTCACAAACATGTGGTGGCCGGACTTTA GAGCGGCGTTCGGGCAGCGGATTAACTTCGAAGGGATTGCTTTTGCGGCTAGGGTTTTGTTTAGAGATAGGAATTTAGCTCTGCCTCATTTGGCGGTGCC GGATATAAGGTACATTGATTGGGCGGAGCTTCGTAGGCGTGGTTTCAAAGCTGTGGTGTTTGATAAGGATAATACCATTACTGTGCCTTACTCTTTGTCG CTATGGGATCCTCTTCGGTCATCGATGAAGCAGTGTAAATCCGTTTTCGGGGATGATATTGCCGTGTTTAGCAACTCTGCTGGGCTTTTGGAGTATGATT ATGATGGTTCAAAAGCAATGGCATTAGAGAGGGCTATTGGTATCAAAGTCATTAGGCATAGAGTGAAGAAACCAGCAGGAACAGCTGAAGAAATTGAGAA GCATTTTGGCTGTACATCATCACAACTTATCATGGTGGGAGATAGACCATTCACGGACATCGTTTACGGTAATAAAAATGGATTCTTGACCATATTAACA AAGCCATTGAGCACGGCCGAGGAGCCCTTCATAGTTAGACAGGTGAGGAAGCTGGAAATGGCGATTTTGAACTACTGGCTTAGAAGAGAGCTGAAGCCGA CTGGTCATAGTTTGCTACTGGATCCAATCCAATGTAGGAAAGAGAAGCCATCAGATTCTTAA
AA sequence Show only first row Show all	>Lus10007350 pacid=23166236 polypeptide=Lus10007350 locus=Lus10007350.g ID=Lus10007350.BGIv1.0 annot-version=v1.0 MHSASAILWPPVCHCPNNPSFITDSNLKLKPSFLPFPQRHNSFRKLCSLAAVHPTNNRDSGESSGQCGSSRELSRSYSVLDDFRDSIRFNGFAYNNPQDE TEEPGRGREEIGGEFEVPPVHRGLFTNMWWPDFRAAFGQRINFEGIAFAARVLFRDRNLALPHLAVPDIRYIDWAELRRRGFKAVVFDKDNTITVPYSLS LWDPLRSSMKQCKSVFGDDIAVFSNSAGLLEYDYDGSKAMALERAIGIKVIRHRVKKPAGTAEEIEKHFGCTSSQLIMVGDRPFTDIVYGNKNGFLTILT KPLSTAEEPFIVRQVRKLEMAILNYWLRRELKPTGHSLLLDPIQCRKEKPSDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58830			haloacid dehalogenase (HAD) su...		Lus10007350 [exp]	0	1
AT3G58830			haloacid dehalogenase (HAD) su...		Lus10020774 [exp]	2.4	0.8443
AT5G23130			Peptidoglycan-binding LysM dom...		Lus10013432 [exp]	5.5	0.7962
AT3G61780		EMB1703	embryo defective 1703 (.1)		Lus10004004 [exp]	9.7	0.8075
AT3G14850		TBL41	TRICHOME BIREFRINGENCE-LIKE 41...		Lus10009209 [exp]	19.8	0.7685
AT2G31170		FIONA, SYCOARAT...	cysteinyl t-RNA synthetase, FI...		Lus10001921 [exp]	21.9	0.7909
AT5G51820		STF1, PGM1, ATP...	STARCH-FREE 1, ARABIDOPSIS THA...		Lus10031669 [exp]	22.0	0.7769
AT5G01030			Protein of unknown function (D...		Lus10021110 [exp]	23.6	0.7833
AT5G06770	C3HZnF		KH domain-containing protein /...		Lus10021043 [exp]	26.4	0.7813
AT5G52520		PRORS1, OVA6	PROLYL-TRNA SYNTHETASE 1, OVUL...		Lus10027506 [exp]	26.8	0.7616
AT5G54880			DTW domain-containing protein ...		Lus10000447 [exp]	28.5	0.7482

Compare expression of checked genes

Lus10007350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.