Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42840 152 / 4e-44 PDF1 protodermal factor 1 (.1) AT2G20515 40 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007352 [exp] 202 / 6e-66 AT2G42840 132 / 3e-39 protodermal factor 1 (.1) Lus10031390 [exp] 205 / 2e-64 AT2G42840 / protodermal factor 1 (.1) Lus10010941 [exp] 204 / 5e-64 AT2G42840 169 / 2e-50 protodermal factor 1 (.1) Lus10022928 [exp] 41 / 0.0002 AT2G20515 173 / 3e-56 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G200900 [exp] 203 / 1e-63 AT2G42840 163 / 4e-48 protodermal factor 1 (.1) Potri.002G060800 [exp] 200 / 6e-63 AT2G42840 167 / 4e-50 protodermal factor 1 (.1) Potri.005G224600 [exp] 52 / 4e-08 AT2G20515 177 / 8e-58 unknown protein Potri.002G038200 [exp] 49 / 4e-07 AT2G20515 189 / 2e-62 unknown protein Potri.004G169200 [exp] 42 / 0.0005 AT2G16630 186 / 1e-55 Pollen Ole e 1 allergen and extensin family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007351 pacid=23166227 polypeptide=Lus10007351 locus=Lus10007351.g ID=Lus10007351.BGIv1.0 annot-version=v1.0 ATGAGAGAAATGCAGCAGAGTTCTTCTTCAGCAGCTGTAATGTGGGTTCTGGCAGCAGCTTTCCTCTCCCACAACTTGGCTGTCCCTGTTATGGCGGCTG CTGCTTCCTCCTCCCACCTTATTGGAGACCAGAAGAACTACTATCCCCCTGACCCTAGTTCCAGCACTCCCCCCTCAGGTTCACACACTCCTTCCACCCC ATCACACGGCGGTTCAACTCCACATCACGGCACACCTTCTCATGGAGGCCACCATTCCACTCCATCAAATCCTCCAACTGGGAACTGTGGAACTCCACCG TACACTCCAACTCCCACAACTCCAACTCCCTCAACTCCGACTCCCTCAACTCCAACTCCCTCGACTCCAACTCCAATAGATCCATCAACTCCTCCTTCAG GAGGCGGCGGGTACAACCCTTCCCCTTCACCACCAACTGGCAGCGGCGGCGGAACACTTACTCCCCCAACACCTATTATCGGCGGTACTCCCCTGACACC TATCATCGGCGGCTCCCCGACAACTCCAGGCACTCCTTTCACACCTCCATTTGTCATTGATCCAAACTCACCCTTCTCATGCAACTACTGGAGGAGTCAC CCAGGCCTGATAATGGGACTGCTAGGCTGGTGGGGTACAATGGGAAACGCATTCGGGGTCCCCAGCTTGCCAGGTTTTGGAGCCTCCACAAGTCTGCCGC AAGCTCTCTCCAACACTCGAAGCGATGGCTACGGAGCGCTGTACAGGGAAGGCACAGCTGCACTGCTGAACTCGATGGTGAGTAACAGGTTTCCCTTCAC AACCAACCAAGTGAGAGAGAGCTTCTTTTCAGCGCTGGGATCCAACAAGGCTGCTGCTTCTCAGGGGAAACTCTTCCAGATGGCAAATGAAGGACGACTC AAGCCCAGGAATTAG
AA sequence Show only first row Show all	>Lus10007351 pacid=23166227 polypeptide=Lus10007351 locus=Lus10007351.g ID=Lus10007351.BGIv1.0 annot-version=v1.0 MREMQQSSSSAAVMWVLAAAFLSHNLAVPVMAAAASSSHLIGDQKNYYPPDPSSSTPPSGSHTPSTPSHGGSTPHHGTPSHGGHHSTPSNPPTGNCGTPP YTPTPTTPTPSTPTPSTPTPSTPTPIDPSTPPSGGGGYNPSPSPPTGSGGGTLTPPTPIIGGTPLTPIIGGSPTTPGTPFTPPFVIDPNSPFSCNYWRSH PGLIMGLLGWWGTMGNAFGVPSLPGFGASTSLPQALSNTRSDGYGALYREGTAALLNSMVSNRFPFTTNQVRESFFSALGSNKAAASQGKLFQMANEGRL KPRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10007351 [exp]	0	1
AT2G40010			Ribosomal protein L10 family p...		Lus10040214 [exp]	1.4	0.9964
AT2G40010			Ribosomal protein L10 family p...		Lus10028276 [exp]	2.4	0.9949
AT1G22590	MADS	AGL87	AGAMOUS-like 87 (.1.2)		Lus10023294 [exp]	3.0	0.9909
AT3G52610			unknown protein		Lus10014215 [exp]	3.2	0.9897
AT5G53950	NAC	ATCUC2, CUC2, A...	CUP-SHAPED COTYLEDON 2, Arabid...		Lus10041924 [exp]	3.7	0.9842
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10023458 [exp]	4.0	0.9897
AT5G51800	Trihelix		Protein kinase superfamily pro...		Lus10031672 [exp]	5.5	0.9893
AT3G22590		PHP, CDC73	PLANT HOMOLOGOUS TO PARAFIBROM...		Lus10026680 [exp]	7.3	0.9811
AT5G07280		EXS, EMS1	EXTRA SPOROGENOUS CELLS, EXCES...		Lus10014996 [exp]	7.7	0.9780
AT3G26660	AS2	LBD24	LOB domain-containing protein ...		Lus10009567 [exp]	7.7	0.9615

Compare expression of checked genes

Lus10007351 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.