Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03100 991 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G17616 240 / 2e-69 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G69290 211 / 3e-59 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G68980 192 / 2e-52 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G09650 144 / 9e-36 CRM3, HCF152 HIGH CHLOROPHYLL FLUORESCENCE 152, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12775 82 / 6e-16 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G04810 80 / 3e-15 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G02860 78 / 1e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G61990 76 / 4e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62590 73 / 5e-13 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020775 [exp] 1296 / 0 AT1G03100 961 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10037275 [exp] 265 / 2e-78 AT4G17616 560 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10037077 [exp] 199 / 7e-55 AT1G69290 827 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015059 [exp] 137 / 2e-33 AT3G09650 969 / 0.0 HIGH CHLOROPHYLL FLUORESCENCE 152, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036908 [exp] 108 / 6e-25 AT1G69290 365 / 1e-120 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035686 [exp] 87 / 2e-18 AT4G17616 176 / 2e-50 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 78 / 2e-14 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 78 / 2e-14 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 76 / 5e-14 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G212400 [exp] 1067 / 0 AT1G03100 1044 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G084400 [exp] 268 / 1e-79 AT4G17616 676 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G095800 [exp] 217 / 4e-61 AT1G69290 860 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G085300 [exp] 130 / 4e-31 AT3G09650 961 / 0.0 HIGH CHLOROPHYLL FLUORESCENCE 152, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G205600 [exp] 82 / 5e-16 AT2G17140 1150 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G241300 [exp] 81 / 2e-15 AT5G04810 1230 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.008G017400 [exp] 80 / 3e-15 AT5G04810 1278 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.015G121700 [exp] 77 / 2e-14 AT4G19890 923 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.001G236800 [exp] 77 / 3e-14 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G217600 [exp] 76 / 4e-14 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10007353 pacid=23166234 polypeptide=Lus10007353 locus=Lus10007353.g ID=Lus10007353.BGIv1.0 annot-version=v1.0 ATGGCTGATACAATCTTGGTTCAGGCTCGAGATCCAGCCAAGTTAAGTGAGGATATAGAAGCTGCATTAGATGCCCGTAGGTTTAGCGAAGCATGGCACT TGTTCAACCAACATATGCAGATGGAAGGATTCCCTAGGAAGTCAGTCTTGAGTAAGCTCTTAACCAGCTTTGCAGAAAGCCTTGATCTCCAGTGGATCGC TAGGGCGTATGACTTGATTGAACAGGCAATTGCAGAGAGTAAGCAGACCTTACTGGAGAAGGAGCCTTTGATTTATCTCTCTCTGAGCCTTGCCAAATGT GGCTCTCCAGTTGCTGCTTCGACTTTAATTAGGAAGTTGATTGAGATGGAACAGTATCCTCCCGTCAGTGCTTGGTCTGCAGTAATTGCTTACATGTCGT TAACCCCTCCGGCTGGAGCTTATCTTGCTGCTGAGCTGATACTTGAGATAGGCTACCTGTTTCAGGACAACAGGATTGATCCGCGGAAGAAGAGCAATGC GCCTTTGATTTCCATGAGGCCTGATACTACTTCTTTCAACATTGCTTTAGCTGGATGTTTCCTGTCTGGGACGACGAGGAAGGGTGAGCAGCTTCTTGAT ATGATGCCTCGTATTGGCGTTAGAGTCGACACGAGTTTGTTGATCACAATGGCGCACATATACGAGAAGAATGGGAGAAGGGAAGAACTGAGGAAGCTTC AGAGGCATATAGACGAAGCCCCTAATTTAACTGATGTTCAGTTTCATCAGTTCAACAATTGTTTGCTGAATTGCCACTTAAAATTTGGAGATCTTGAGCC TGCTTCTGACATGGTGTTGAAGATGCTGCAGAAAGCAAAGCAAGCACAAAAGTCTCCTGCCATGGCTACATTCAGTTTCTCTGGTGATAATAATAACTCA CCCTCCAGTGGTCAGTGTTCTCAGGAAAGCTCGAATAATAAGGAATTGGATGATGAAGGAAATGTCAGGTCATGCCTAAAAACCATCATTTCTTACCAAG ATTTCAGTAGGGATAGGTTCTTCCTGAAACTTCAAGCCGAGGCAAAAGAAGTGCTCGAGACTTTGTTAGCGAAATTGCAGGTGCAGGTGGAATTGATTAC AACTAAGCATGGAATTCTTCAGCCAACGGAGAAGATTTATGTGAAACTGGTTAAGGCGTTTCTTGAAGCTGGAAGGACGAAAGAATTGGCTATGTTTCTT ATCAAAGCTGAGAAAGAAGACTCCTCCCCTACTTCCAATGATGATTCAGCAATGGTTGAAGTTATCAACTCGTGCATTTCTCTTGGTTGGCTAGATCAGG CGCATGACCTCCTCGACGAAATGCGTATGAACGGGTTTAGAGCTTCTTCTTCTGTGTATGCTTCCCTCTTGAAGGCATACTGCAAAGCAAATCGAGCCCG TGATGCCAAGGCCCTTCTTCAAGAAGCTCGTAGAGCAGGGGTCCAGCTCGATTCTCGCAGTTACGAAGCATTGATGGCTTCCCAAGTGCTTGAGAAGGAC ACGCAAGGAGCACTCCACCTATTCAAAGAGATGAAAGATGCTAAGCTACCGAGAGGCGGCCATCAGAAATTCGAGATGCTCGTTCAAGGCTGTGCGGAGA ATCGCGAAGCAGGGTTGATGGCAAAGCTCTTGCGTGAAATTCACGAGGGGCAGACTGTGGATTCCGGAGTTCACGATTGGAACAACGTGATCCATTTCTT CTCCAAGAAGAGGCTGATGAACGACGCGGAGAAGGCCCTGAAGAAGATGAGAAGTCTAGGGTATACACCCAATGCGGAGACTTTCCACTCGATGGTAACT GGGTATGCTGCCGTTGGAGGGAAGTACATAGAAGTGACTGAGCTATGGGGGGAGATGAAGTCCATTGCTTCGGCAACTTCGTCGATGAAGTTCGACCAGG AGCTACTGGACTCTGTCCTGTATACATTTGTGAGAGGAGGGTTTTTCACTCGAGCAAATGAAGTTATGGATGTGATGGAGAAAGGGAAGATGTTCATAGA TAAGTACAAGTATAGAACTCTCTTTCTGAAGTACCATAAGACGATCTACAAGGGAAAGGCTCCCAAGTTTCAGACGGAGTCACAGATGAACAAGAGAGAC GCAGCGCTGTCGTTCAAGAAGTGGTTAGGCCTTGGTTGA
AA sequence Show only first row Show all	>Lus10007353 pacid=23166234 polypeptide=Lus10007353 locus=Lus10007353.g ID=Lus10007353.BGIv1.0 annot-version=v1.0 MADTILVQARDPAKLSEDIEAALDARRFSEAWHLFNQHMQMEGFPRKSVLSKLLTSFAESLDLQWIARAYDLIEQAIAESKQTLLEKEPLIYLSLSLAKC GSPVAASTLIRKLIEMEQYPPVSAWSAVIAYMSLTPPAGAYLAAELILEIGYLFQDNRIDPRKKSNAPLISMRPDTTSFNIALAGCFLSGTTRKGEQLLD MMPRIGVRVDTSLLITMAHIYEKNGRREELRKLQRHIDEAPNLTDVQFHQFNNCLLNCHLKFGDLEPASDMVLKMLQKAKQAQKSPAMATFSFSGDNNNS PSSGQCSQESSNNKELDDEGNVRSCLKTIISYQDFSRDRFFLKLQAEAKEVLETLLAKLQVQVELITTKHGILQPTEKIYVKLVKAFLEAGRTKELAMFL IKAEKEDSSPTSNDDSAMVEVINSCISLGWLDQAHDLLDEMRMNGFRASSSVYASLLKAYCKANRARDAKALLQEARRAGVQLDSRSYEALMASQVLEKD TQGALHLFKEMKDAKLPRGGHQKFEMLVQGCAENREAGLMAKLLREIHEGQTVDSGVHDWNNVIHFFSKKRLMNDAEKALKKMRSLGYTPNAETFHSMVT GYAAVGGKYIEVTELWGEMKSIASATSSMKFDQELLDSVLYTFVRGGFFTRANEVMDVMEKGKMFIDKYKYRTLFLKYHKTIYKGKAPKFQTESQMNKRD AALSFKKWLGLG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03100			Pentatricopeptide repeat (PPR)...		Lus10007353 [exp]	0	1
AT4G20980			Eukaryotic translation initiat...		Lus10015435 [exp]	3.2	0.9036
AT1G62390		CLMP1, Phox2	Phox2, CLUMPED CHLOROPLASTS 1,...		Lus10029481 [exp]	4.0	0.8895
AT2G05920			Subtilase family protein (.1)		Lus10033431 [exp]	6.7	0.8934
AT1G77405			Pentatricopeptide repeat (PPR)...		Lus10029697 [exp]	7.4	0.8584
AT3G11250			Ribosomal protein L10 family p...		Lus10014841 [exp]	7.6	0.8955
AT1G29900		VEN3, CARB	VENOSA 3, carbamoyl phosphate ...		Lus10021430 [exp]	10.1	0.8847
AT1G35660			unknown protein		Lus10028705 [exp]	11.0	0.8362
AT1G03530		ATNAF1	nuclear assembly factor 1 (.1)		Lus10022870 [exp]	11.4	0.8862
AT1G31840			Tetratricopeptide repeat (TPR)...		Lus10009465 [exp]	12.0	0.8563
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10031661 [exp]	12.2	0.8327

Compare expression of checked genes

Lus10007353 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.