Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58800 387 / 1e-134 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G168500 [exp] 427 / 1e-150 AT3G58800 415 / 1e-145 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007354 pacid=23166239 polypeptide=Lus10007354 locus=Lus10007354.g ID=Lus10007354.BGIv1.0 annot-version=v1.0 ATGTTGAAACGTGGAACCAGAACCAGATCCTGCCTACTTCAAAACTGGCAGTTGTTAGTTATAGTGTTCTCTGTGCTTGGGATTCTACTCTTTGTGTTTT TTACTGAACCTGCACAGTGGAACAAGGAAATTTTGCACTCAGATCATGATCAGGATAGCCCTACTGTAGAGTTCAGGAATGGGACAGATATCATATGGCA GATACCTTCTTCTCCCAGAGCAGTCCTCTTTTTAGCTCACGGCTGTAACGGCAAAGCGCTTAACTTCTGGGACAAATCTCCCAGTTGCCCTAACTGCATC GGTTTGCCCGAGGAAAGGCTACTTGTGCTAAACGCACTTGCCCATAACTTCGCTGTTCTTACAATATCAAGCAGAAAACGATGCTGGACATTTAGAGAAG AGATGCTAATCGTAAAAGGCATCATCGAATCGTGGATTCGGAATAATAAGCTGGACAAAGTTCCTCTTGTCGCTTTGGGAGCCTCTTCCGGTGGATATTT CGTCTCCGCTCTAGCTACCAATATCAAGTTCAGTAGCATCGCCATCATGATTGCCGAAGGGGTCTTCAGCGAGATGGATATCCCTGAGGATTATCCGCCG ACTCTTTTCGTGCACATGCCAAAAGATGTAGATAGGCAGCAGAAGATTAGTGTGTTCATGGAGGTGCTGAAGAGTAAAGGCATTGATGTTGCAGAGGTTG AATGCTTGGACCTTCGGTTGTCGAAGACTTTCTTAGCTGAAAGAGTTCCGGGTGTTGATATGAGTGTTTCTACCAAGTTGTTTGATCTGTTTAAGGAGAA AGGCTTTGTTGATGAGCAAGGATATATGAAGAAAGATGGACGTGCTACGCGGTGGAAAGAAGCTGTTCGTAAAAGTGGGATTCCGCTGGAGAAACGATTG TTCCAGCATGTGCAGGAGGAGCTGAACCTTGCTTTTGCGTATCATGAAATGACTAGCTTGCCGTCAGAGGACATATTCAGATGGTTTGAATCTCATTTGA AGCATCGCCTTGGGAAAATACACACATTATAA
AA sequence Show only first row Show all	>Lus10007354 pacid=23166239 polypeptide=Lus10007354 locus=Lus10007354.g ID=Lus10007354.BGIv1.0 annot-version=v1.0 MLKRGTRTRSCLLQNWQLLVIVFSVLGILLFVFFTEPAQWNKEILHSDHDQDSPTVEFRNGTDIIWQIPSSPRAVLFLAHGCNGKALNFWDKSPSCPNCI GLPEERLLVLNALAHNFAVLTISSRKRCWTFREEMLIVKGIIESWIRNNKLDKVPLVALGASSGGYFVSALATNIKFSSIAIMIAEGVFSEMDIPEDYPP TLFVHMPKDVDRQQKISVFMEVLKSKGIDVAEVECLDLRLSKTFLAERVPGVDMSVSTKLFDLFKEKGFVDEQGYMKKDGRATRWKEAVRKSGIPLEKRL FQHVQEELNLAFAYHEMTSLPSEDIFRWFESHLKHRLGKIHTL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58800			unknown protein		Lus10007354 [exp]	0	1
AT5G10780			unknown protein		Lus10040473 [exp]	1.0	0.9114
AT1G09330		ECHIDNA, ECH	unknown protein		Lus10010063 [exp]	2.4	0.8937
AT3G20920			translocation protein-related ...		Lus10009945 [exp]	3.5	0.8805
AT4G25670			unknown protein		Lus10038842 [exp]	4.2	0.8559
AT1G09330		ECHIDNA, ECH	unknown protein		Lus10004514 [exp]	4.5	0.8753
AT1G23750			Nucleic acid-binding, OB-fold-...		Lus10013010 [exp]	6.2	0.8251
AT1G79390			unknown protein		Lus10001838 [exp]	8.5	0.8263
AT1G77370			Glutaredoxin family protein (....		Lus10028355 [exp]	9.2	0.8640
AT5G23680			Sterile alpha motif (SAM) doma...		Lus10016718 [exp]	9.2	0.7981
AT1G67856			RING/U-box superfamily protein...		Lus10011416 [exp]	9.3	0.8093

Compare expression of checked genes

Lus10007354 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.