Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78570 953 / 0 ATRHM1, RHM1, ROL1 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) AT3G14790 923 / 0 ATRHM3, RHM3 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 3, rhamnose biosynthesis 3 (.1) AT1G53500 920 / 0 ATRHM2, ATMUM4, RHM2, MUM4 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 2, ARABIDOPSIS THALIANA MUCILAGE-MODIFIED 4, NAD-dependent epimerase/dehydratase family protein (.1) AT1G63000 325 / 5e-107 UER1, NRS/ER "UDP-4-KETO-6-DEOXY-D-GLUCOSE-3,5-EPIMERASE-4-REDUCTASE 1", nucleotide-rhamnose synthase/epimerase-reductase (.1) AT4G20460 115 / 1e-27 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G44480 103 / 3e-23 DUR DEFECTIVE UGE IN ROOT, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G28760 98 / 4e-22 UXS6 UDP-XYL synthase 6 (.1.2.3) AT5G59290 98 / 5e-22 ATUXS3, UXS3 UDP-glucuronic acid decarboxylase 3 (.1.2) AT3G46440 97 / 8e-22 UXS5 UDP-XYL synthase 5 (.1.2) AT1G30620 97 / 3e-21 MURUS4, HSR8, UXE1, MUR4 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020776 [exp] 1197 / 0 AT1G78570 964 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10010942 [exp] 980 / 0 AT1G78570 1130 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10038146 [exp] 959 / 0 AT1G78570 1228 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10042497 [exp] 959 / 0 AT1G78570 1227 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10005560 [exp] 876 / 0 AT1G78570 1123 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10013695 [exp] 760 / 0 AT1G78570 1005 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10014147 [exp] 335 / 4e-111 AT1G63000 530 / 0.0 "UDP-4-KETO-6-DEOXY-D-GLUCOSE-3,5-EPIMERASE-4-REDUCTASE 1", nucleotide-rhamnose synthase/epimerase-reductase (.1) Lus10006719 [exp] 333 / 2e-110 AT1G63000 531 / 0.0 "UDP-4-KETO-6-DEOXY-D-GLUCOSE-3,5-EPIMERASE-4-REDUCTASE 1", nucleotide-rhamnose synthase/epimerase-reductase (.1) Lus10038423 [exp] 105 / 5e-24 AT1G30620 682 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G103700 [exp] 960 / 0 AT1G78570 1211 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.001G383500 [exp] 958 / 0 AT1G78570 1190 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.006G272700 [exp] 863 / 0 AT1G78570 1078 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.001G112000 [exp] 324 / 8e-107 AT1G63000 535 / 0.0 "UDP-4-KETO-6-DEOXY-D-GLUCOSE-3,5-EPIMERASE-4-REDUCTASE 1", nucleotide-rhamnose synthase/epimerase-reductase (.1) Potri.003G120000 [exp] 321 / 1e-105 AT1G63000 532 / 0.0 "UDP-4-KETO-6-DEOXY-D-GLUCOSE-3,5-EPIMERASE-4-REDUCTASE 1", nucleotide-rhamnose synthase/epimerase-reductase (.1) Potri.011G156100 [exp] 102 / 4e-23 AT1G30620 712 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.006G022000 [exp] 99 / 4e-22 AT1G30620 676 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.001G237200 [exp] 99 / 4e-22 AT3G46440 637 / 0.0 UDP-XYL synthase 5 (.1.2) Potri.002G204400 [exp] 99 / 1e-21 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.010G207200 [exp] 97 / 1e-21 AT2G28760 625 / 0.0 UDP-XYL synthase 6 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10007355 pacid=23166245 polypeptide=Lus10007355 locus=Lus10007355.g ID=Lus10007355.BGIv1.0 annot-version=v1.0 ATGGCTACGTACAAACCAAAGAACATCCTAATAACAGGAGCAGCAGGCTTCATAGCATCCCACGTATGCAACAGGCTAATCAGGAATCACCCAGATTACA ACGTCGTCGTCCTCGACAAGCTCGACTACTGCTCGAACCTCAACAACCTCAACCCTTCACGCTCCTCCCCGAACTTCAAGTTCGTCAAGGGCGACATCGG CAGCGCCGACATGGTAAACTTCATCCTGTTGACGGAGTCGATCGACACCATCATGCATTTCGCCGCGCAAACCCACGTGGACAACTCTTTTGGAAACAGC TTCGAGTTCACCAATAACAACATCTACGGCACGCATGTTCTCCTTGAGGCTTGTAAGCTGACTCAGGGACAGGTCAAGAGGTTCATCCACGTCAGCGCCG ACGAGGTTTATGGCGAGACAGATGAGGATGCTGTGGTGGGTAACCATGAGGCTTCCCAGTTGCTGCCGACGAATCCTTATTCGGCCACGAAAGCTGCTGC AGAGATGCTTGTCATGGCATACGGACGGTCGTACGGTCTACCTGTGATCACTACTCGAGGTAACAATGTGTATGGCCCTAATCAGTTCCCTGAGAAGTTG ATTCCTAAGTTCATTTTGTTAGCTATGATGGGGAAGCCTTTACCGATTCACGGAGATGGGTCAAATGTTCGGAGTTATTTGTACTGCGAGGATGTCGCTG AGGCGTTCGAGGTCGTGTTACACAAGGGCGAGGTTGGACATGTGTACAACATTGGTACCAAGAAAGAAAGGAGGGTTCTTGATGTGGCTAGTGACATTTG CAAGATGTTTGATTTGAACCCTAATGAACAAATCAAGTTTGTGGAGAATAGGCCCTTTAATGACCAGAGGTATTACTTGGATGATCAAAAGCTCAAGACT TTGGGCTGGTGTGAGAGGACTACATGGGAAGAAGGGCTTAAGAAGACCATGGAATGGTACACTACACATCCCGGGTTTTGGGGCGATGTGTCCGGTGCAT TGCTTCCTCATCCGAGAATGCTCATGGCTACCGGAATGGATCAGAGTAATAATGTCGATCCACGAAAGATAGGGAACAATGTAACGAGTATTCCAGAAAA GCCGTTACTGAAGTTCTTGATCTACGGGAGAACTGGCTGGATAGCGAGTCTGCTTGGGAAGGCATGCGAAAAGCAAGGTATTGCATACGAATTCGGAAAG GGGAGGTTGGAGAATCGGTCGCAGATTTCAGAAGATATATCAGAATTAAAGCCGACTCATGTGTTCAACATTTTCGAGACGAACAAGGCTAATCAGACGA TTCGAGCCAATGCCGTCGCCGGTGTCTTAACCTTGGCGGATGTATGCAAACAGAATGACCTCATGATGATGAACTATGCATCCAGGAGCATACTTGAGTA TGGTGATTCACATGGTGCAATGGTAGAGGAGCTCTTGAGCGAATATGACAATGTCTGCAACCTCATAGTTCACACGCCGATCTCTTCGGATCTAAGCAAT CCACGCAACTTCATGGCCAAGATTTCGAGGTACGACAAGGTGGCGAACATCCCAAACAGCATGACAGTGCTCGACGAGCTTCTACCCATCTCGATCGAGA TGGCGAAGAGGAACCTAAGAGGTGTATGGAACTTCACAAATCCTGGAGTTGTGACCCACAACGAGCTTCTAGAGATGTACCGTAAGTACATCGATCCAGA CTTCAAGTGGACCAATTTCACAGCAGAAGAACAAACCAAGATCTCGGCGGTCGGAAGTAACAACAATGCTTTGAATTGTTCCGACCTCAAGAGTGAGTTT CCTGAGATTCTGTCCATCAAAGAGTCTCTCGTTAAGTATGTATTCGAACCCAACAAGAAGACCTATTAG
AA sequence Show only first row Show all	>Lus10007355 pacid=23166245 polypeptide=Lus10007355 locus=Lus10007355.g ID=Lus10007355.BGIv1.0 annot-version=v1.0 MATYKPKNILITGAAGFIASHVCNRLIRNHPDYNVVVLDKLDYCSNLNNLNPSRSSPNFKFVKGDIGSADMVNFILLTESIDTIMHFAAQTHVDNSFGNS FEFTNNNIYGTHVLLEACKLTQGQVKRFIHVSADEVYGETDEDAVVGNHEASQLLPTNPYSATKAAAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKL IPKFILLAMMGKPLPIHGDGSNVRSYLYCEDVAEAFEVVLHKGEVGHVYNIGTKKERRVLDVASDICKMFDLNPNEQIKFVENRPFNDQRYYLDDQKLKT LGWCERTTWEEGLKKTMEWYTTHPGFWGDVSGALLPHPRMLMATGMDQSNNVDPRKIGNNVTSIPEKPLLKFLIYGRTGWIASLLGKACEKQGIAYEFGK GRLENRSQISEDISELKPTHVFNIFETNKANQTIRANAVAGVLTLADVCKQNDLMMMNYASRSILEYGDSHGAMVEELLSEYDNVCNLIVHTPISSDLSN PRNFMAKISRYDKVANIPNSMTVLDELLPISIEMAKRNLRGVWNFTNPGVVTHNELLEMYRKYIDPDFKWTNFTAEEQTKISAVGSNNNALNCSDLKSEF PEILSIKESLVKYVFEPNKKTY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10007355 [exp]	0	1
AT3G22680		RDM1	RNA-DIRECTED DNA METHYLATION 1...		Lus10003012 [exp]	6.1	0.9048
					Lus10003755 [exp]	10.2	0.8947
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10008186 [exp]	12.1	0.7777
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10002907 [exp]	12.8	0.8903
AT1G01180			S-adenosyl-L-methionine-depend...		Lus10013195 [exp]	13.1	0.8915
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10036832 [exp]	14.4	0.8910
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10019195 [exp]	19.3	0.8890
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10027771 [exp]	19.6	0.8888
AT5G48140			Pectin lyase-like superfamily ...		Lus10039154 [exp]	20.4	0.7454
					Lus10038295 [exp]	21.9	0.8886

Compare expression of checked genes

Lus10007355 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.