Plant FIBer expression Database

Lus10007358 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G04865 260 / 1e-79 Aminotransferase-like, plant mobile domain family protein (.1)
AT2G25010 155 / 1e-41 Aminotransferase-like, plant mobile domain family protein (.1)
AT1G17930 129 / 9e-33 Aminotransferase-like, plant mobile domain family protein (.1)
AT1G48120 74 / 8e-14 hydrolases;protein serine/threonine phosphatases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001163
[exp]
336 / 3e-113 AT2G04865 347 / 3e-115 Aminotransferase-like, plant mobile domain family protein (.1)
Lus10012346
[exp]
319 / 3e-104 AT2G04865 347 / 1e-112 Aminotransferase-like, plant mobile domain family protein (.1)
Lus10006393
[exp]
315 / 4e-102 AT2G04865 331 / 5e-106 Aminotransferase-like, plant mobile domain family protein (.1)
Lus10001737
[exp]
226 / 4e-66 AT2G04865 636 / 0.0 Aminotransferase-like, plant mobile domain family protein (.1)
Lus10034059
[exp]
47 / 2e-06 AT1G48120 43 / 1e-05 hydrolases;protein serine/threonine phosphatases (.1)
Lus10000980
[exp]
45 / 2e-05 AT1G17930 56 / 9e-10 Aminotransferase-like, plant mobile domain family protein (.1)
Lus10040026
[exp]
44 / 2e-05 AT1G48120 45 / 3e-06 hydrolases;protein serine/threonine phosphatases (.1)
Lus10024265
[exp]
46 / 4e-05 AT1G17930 59 / 9e-10 Aminotransferase-like, plant mobile domain family protein (.1)
Lus10000686
[exp]
45 / 4e-05 AT1G17930 87 / 3e-20 Aminotransferase-like, plant mobile domain family protein (.1)
Poplar homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF10536 PMD Plant mobile domain
Representative CDS sequence
>Lus10007358 pacid=23166243 polypeptide=Lus10007358 locus=Lus10007358.g ID=Lus10007358.BGIv1.0 annot-version=v1.0
ATGGACAACGGTGAGATCGATCCTGTACCGATCAAAGGGTATTTTGAACAAATGGATGGGGACGCTAGTAGTCCAGGTCCAATAGATACTTCGGTGCTGT
ATGATCAAGTGAATCATGTATCATCAGCAGTTTGGGATGGGCAGGACCGTGGGGTGCTTAGATGCCATGAGCACACTTCCAAGTTGGGTGAATGGAGGCT
TACGAATAAACAGATTGCATTGTGCTGGAGTTACTTTCACCTTAATATCGGCCAGCCAAAATTTTATCAAGAGCCTGCCCTTGATTGTTTTCCTTTCGTA
CTCAGGTGGAAAGGCAAGCAAAGTGCTGCGATGGTTAAACGTGATCTGGGTTTCTACCGCAAAGCACTGGACTCTTTGGACTCAAGTGAAGTGGAGTGGC
TTCCTTACAAAACTATGGACAACGCATTAATACCAGAGAGCATAAGGAGTACACTGATTCTCGGGAGATCAAGGACGATGTTGATATGCTTTGACAAGGC
AGAAAGACACCTACCAGATCGTTGCCTACGGCAATTTGACATGGTCCAAGGGATCCCTCAAGACGTCCAGCAGTGGGAAAGAAAGAGTCGTGGTGTAGAC
AGCGGGGTGGACTTGTGTGGCAAAATGGGTTCTGAGCTTAATGAATGGTCATCCCGTGAGTTCTCCGTTGTACTAGGCCATTCTGGCATAGATGGAAGTG
AATATATGCGGTGGTATTCAAGGATTACTCGTAAATTCGTGGGGAGACCGGACCCCTTGCCTCAGTTTCAGAGAAGAGTAAATTTCAGAACGAAAAATAA
GCGGCTGAGTGCTGGGTTAAGAGACATTGCACATATTGCAGACATGTTCCCAACAGAGGGATTGGATCCTCTACAGAACGAGTCAATATGGCGAATTCGG
GAAATTGCTCATGATTGCTTGGGAGACAATGCTAGCGGTGAAATCATAACGTCAACTAATATGCCGGTGGAATCCAGTAAGAAAAGGGGAAAGGAACGTG
TATTTCGGAAAGCCAATGCAGAACAGGATGATCAATCATGTTCTATTCAGAACAACATTGAAGACTGTTCGAACACCAAACTCGAGCTGAATATGAGGAA
AAGGGGGAGGGAGAAAATGAAGAAGAACCAGGACGGGAAGCAAAAAGATGATGATCGAATGCAATGTGATGGCATTCTTGAGGATTCCACAGTACAATCG
CCTAGTCATTCATCTGACAAAAGTGAGCAGCTTTGCCATACTGATGGCGAGATGGTTCATCATCAACAGCCTTCCCAATCTGATGACATTGCCATAAATG
GGATTTCCACTGCCGTTGAACGAGAAGGAACAGATTCTTGTTTCGTCGACAATATGATTCAGGACTCGGATTTGGAGGCGTGCTGA
AA sequence
>Lus10007358 pacid=23166243 polypeptide=Lus10007358 locus=Lus10007358.g ID=Lus10007358.BGIv1.0 annot-version=v1.0
MDNGEIDPVPIKGYFEQMDGDASSPGPIDTSVLYDQVNHVSSAVWDGQDRGVLRCHEHTSKLGEWRLTNKQIALCWSYFHLNIGQPKFYQEPALDCFPFV
LRWKGKQSAAMVKRDLGFYRKALDSLDSSEVEWLPYKTMDNALIPESIRSTLILGRSRTMLICFDKAERHLPDRCLRQFDMVQGIPQDVQQWERKSRGVD
SGVDLCGKMGSELNEWSSREFSVVLGHSGIDGSEYMRWYSRITRKFVGRPDPLPQFQRRVNFRTKNKRLSAGLRDIAHIADMFPTEGLDPLQNESIWRIR
EIAHDCLGDNASGEIITSTNMPVESSKKRGKERVFRKANAEQDDQSCSIQNNIEDCSNTKLELNMRKRGREKMKKNQDGKQKDDDRMQCDGILEDSTVQS
PSHSSDKSEQLCHTDGEMVHHQQPSQSDDIAINGISTAVEREGTDSCFVDNMIQDSDLEAC

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G04865 Aminotransferase-like, plant m... Lus10007358
[exp]
0 1
AT1G52620 Pentatricopeptide repeat (PPR)... Lus10036090
[exp]
2.4 0.8347
AT3G62080 SNF7 family protein (.1.2) Lus10038021
[exp]
3.2 0.8375
AT5G12100 pentatricopeptide (PPR) repeat... Lus10008650
[exp]
4.2 0.8315
AT5G45760 Transducin/WD40 repeat-like su... Lus10007297
[exp]
7.1 0.7877
AT3G18510 unknown protein Lus10042971
[exp]
12.4 0.8028
AT4G25180 RNA polymerase III RPC4 (.1) Lus10009655
[exp]
16.4 0.8016
AT1G14770 RING/FYVE/PHD zinc finger supe... Lus10015562
[exp]
17.4 0.8142
AT4G25180 RNA polymerase III RPC4 (.1) Lus10009019
[exp]
18.8 0.8034
AT3G26350 unknown protein Lus10011406
[exp]
19.0 0.7835
AT3G62000 S-adenosyl-L-methionine-depend... Lus10010276
[exp]
19.2 0.7652

Lus10007358 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.