Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01750 100 / 5e-26 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT3G11740 88 / 1e-21 Protein of unknown function (DUF567) (.1) AT2G14560 82 / 4e-19 LURP1 LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA, Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT1G33840 81 / 2e-18 Protein of unknown function (DUF567) (.1) AT3G16900 79 / 3e-18 Protein of unknown function (DUF567) (.1) AT3G56180 69 / 2e-14 Protein of unknown function (DUF567) (.1) AT3G10986 49 / 4e-07 Protein of unknown function (DUF567) (.1) AT3G15810 42 / 0.0001 Protein of unknown function (DUF567) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020780 [exp] 334 / 3e-118 AT5G01750 75 / 7e-17 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10022754 [exp] 96 / 3e-24 AT5G01750 214 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10014154 [exp] 95 / 6e-24 AT5G01750 206 / 2e-67 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10014021 [exp] 88 / 3e-21 AT5G01750 202 / 6e-66 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10002477 [exp] 87 / 6e-21 AT5G01750 218 / 5e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10001255 [exp] 87 / 6e-21 AT5G01750 218 / 5e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10009092 [exp] 77 / 3e-17 AT5G01750 161 / 7e-50 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10025253 [exp] 76 / 6e-17 AT5G01750 169 / 4e-53 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10025254 [exp] 73 / 1e-15 AT5G01750 166 / 1e-51 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G130500 [exp] 100 / 4e-26 AT5G01750 218 / 6e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131850 [exp] 98 / 4e-25 AT5G01750 213 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130800 [exp] 92 / 8e-23 AT5G01750 162 / 4e-50 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130700 [exp] 92 / 9e-23 AT5G01750 209 / 2e-68 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131800 [exp] 91 / 2e-22 AT5G01750 213 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131100 [exp] 88 / 2e-21 AT5G01750 154 / 3e-47 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131701 [exp] 85 / 4e-20 AT5G01750 201 / 2e-65 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.010G182300 [exp] 82 / 4e-19 AT3G56180 201 / 5e-66 Protein of unknown function (DUF567) (.1) Potri.016G131400 [exp] 81 / 8e-19 AT5G01750 147 / 3e-44 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.008G075100 [exp] 81 / 1e-18 AT3G56180 177 / 2e-56 Protein of unknown function (DUF567) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF04525 [flax] [poplar] LOR LURP-one-related
Representative CDS sequence Show only first row Show all	>Lus10007360 pacid=23166247 polypeptide=Lus10007360 locus=Lus10007360.g ID=Lus10007360.BGIv1.0 annot-version=v1.0 ATGGCTGGCACCGTAGTTAGCCCTTCGTACTGTAGTTCTACAGCAGTGGACATGGAGATATCAAACAAGGATTACCGGCTCATCACTGTTACTGATCATC AGGTTCATGGCAGATCGATCCAGTTTAAGGTGAAATCCGTCGCTCTCTCTTTACATCACCGGAAGCTAATCCAAGATCCCGCCGGCAATGTCATCCTCAC CGTCCGCCTAATGGCGAATTACAAGTGGCAGGCGTTCAGAGGAGAAAGCATAGAGGCGAATGACTTAATATTCTCTTCAAAAACAGAGTTTCCTGTGAAA GATAAGAAGACGAGAGCACTCCCAGTTATGGAGGTTTTTCTGGGAAACTTCACAAAAGATAAGGTGGATTGTGATTTCAAGGTCCAGGGGAACTTGTCAA AGACTAGTTTTGTTGTTCAGGCAGCTGGAAGAGGAGATTCAGCAGGCACCATAGTGGCACAGCAGATAGATATGATTGATGGTGAAGGTAAACAGAAATC GGTGGTGAGGGTGTATCCGAACATCGATCAAGCATTCATGGTGGCCCTCATTGTTATCATGGATACCACAAATCGTGCAGCTGGGTCGGATGATCCCCTC GCCGCCAGTGGCATGCTCATGACTGCAATCCAATCATCTTAA
AA sequence Show only first row Show all	>Lus10007360 pacid=23166247 polypeptide=Lus10007360 locus=Lus10007360.g ID=Lus10007360.BGIv1.0 annot-version=v1.0 MAGTVVSPSYCSSTAVDMEISNKDYRLITVTDHQVHGRSIQFKVKSVALSLHHRKLIQDPAGNVILTVRLMANYKWQAFRGESIEANDLIFSSKTEFPVK DKKTRALPVMEVFLGNFTKDKVDCDFKVQGNLSKTSFVVQAAGRGDSAGTIVAQQIDMIDGEGKQKSVVRVYPNIDQAFMVALIVIMDTTNRAAGSDDPL AASGMLMTAIQSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01750			Protein of unknown function (D...		Lus10007360 [exp]	0	1
AT1G08315			ARM repeat superfamily protein...		Lus10006007 [exp]	2.6	0.8291
					Lus10019456 [exp]	3.7	0.8053
AT1G28270		RALFL4	ralf-like 4 (.1)		Lus10015431 [exp]	5.0	0.7603
AT1G10385			Vps51/Vps67 family (components...		Lus10033648 [exp]	7.1	0.7753
AT5G61890	AP2_ERF		Integrase-type DNA-binding sup...		Lus10022426 [exp]	9.4	0.7685
AT5G14870		ATCNGC18	cyclic nucleotide-gated channe...		Lus10039415 [exp]	10.4	0.7126
AT1G23030		PUB11	ARM repeat superfamily protein...		Lus10014900 [exp]	15.0	0.7052
AT1G29430			SAUR-like auxin-responsive pro...		Lus10007067 [exp]	15.2	0.6707
AT1G10385			Vps51/Vps67 family (components...		Lus10017692 [exp]	18.5	0.6789
AT4G10260			pfkB-like carbohydrate kinase ...		Lus10040562 [exp]	20.0	0.6268

Compare expression of checked genes

Lus10007360 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.