Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25660 781 / 0 Amidase family protein (.1) AT5G64440 142 / 4e-36 ATFAAH fatty acid amide hydrolase (.1) AT5G07360 106 / 6e-24 Amidase family protein (.1.2) AT4G34880 87 / 7e-18 Amidase family protein (.1) AT1G08980 78 / 3e-15 ATTOC64-I, ATAMI1 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) AT3G17970 70 / 2e-12 ATTOC64-III translocon at the outer membrane of chloroplasts 64-III (.1) AT5G09420 69 / 3e-12 MTOM64, ATTOC64-V, AtmtOM64 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020781 [exp] 967 / 0 AT3G25660 780 / 0.0 Amidase family protein (.1) Lus10007095 [exp] 144 / 2e-36 AT5G64440 776 / 0.0 fatty acid amide hydrolase (.1) Lus10016685 [exp] 144 / 2e-36 AT5G64440 453 / 2e-152 fatty acid amide hydrolase (.1) Lus10020468 [exp] 142 / 6e-36 AT5G64440 781 / 0.0 fatty acid amide hydrolase (.1) Lus10007094 [exp] 142 / 8e-36 AT5G64440 795 / 0.0 fatty acid amide hydrolase (.1) Lus10027852 [exp] 121 / 4e-29 AT4G34880 489 / 3e-170 Amidase family protein (.1) Lus10043019 [exp] 110 / 3e-25 AT5G07360 858 / 0.0 Amidase family protein (.1.2) Lus10032519 [exp] 108 / 1e-24 AT5G07360 847 / 0.0 Amidase family protein (.1.2) Lus10025066 [exp] 104 / 1e-23 AT4G34880 484 / 3e-168 Amidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G086350 [exp] 804 / 0 AT3G25660 766 / 0.0 Amidase family protein (.1) Potri.007G098600 [exp] 159 / 6e-42 AT5G64440 478 / 2e-162 fatty acid amide hydrolase (.1) Potri.005G070300 [exp] 153 / 1e-39 AT5G64440 488 / 1e-166 fatty acid amide hydrolase (.1) Potri.001G285900 [exp] 141 / 9e-36 AT5G64440 769 / 0.0 fatty acid amide hydrolase (.1) Potri.004G169300 [exp] 124 / 2e-30 AT4G34880 493 / 7e-172 Amidase family protein (.1) Potri.009G130400 [exp] 120 / 6e-29 AT4G34880 489 / 1e-170 Amidase family protein (.1) Potri.015G109400 [exp] 112 / 7e-26 AT5G07360 823 / 0.0 Amidase family protein (.1.2) Potri.004G171300 [exp] 108 / 5e-25 AT4G34880 473 / 5e-164 Amidase family protein (.1) Potri.009G130500 [exp] 108 / 9e-25 AT4G34880 500 / 2e-174 Amidase family protein (.1) Potri.004G171000 [exp] 94 / 4e-20 AT4G34880 535 / 0.0 Amidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01425 [flax] [poplar] Amidase Amidase
Representative CDS sequence Show only first row Show all	>Lus10007361 pacid=23166238 polypeptide=Lus10007361 locus=Lus10007361.g ID=Lus10007361.BGIv1.0 annot-version=v1.0 ATGCTATCCACTCTGTATCCCCCACGTTCACTCTCCCGCTTCCAACTCCACTTTACCTCCTCCGTCAAGCCCCGAGCTTTCGCCGCCGTCGCCGCTGCCT CTTCTCTCTCCGGCTCCCCTCCGCCGCTCACATCGACCCAATCCCCAGAAGGAGCTCCGGCCTCCCAAATCCTCTCAATACGTCACTCGCTTCTCTCCCG AGCCGTCACCGCCACCCAGCTCGCCGAGTCTTACTTGACCCGCCTCCGCCTCACTGAGCCGCAGCTTAATTCCTTCATCCATGTCTCCGATTCTGTGCTG AAAGTTGCGCAGGAGATCGATGCTAGGATCGATAGGGGCGAAGAGGAAGAACTGGGACCCCTCGCCGGAATCATTGTCGGCGTTAAGGATAATATATGTA CTGCGGATATGCCGTCCACCGGCGGCTCCCGCATTCTGGAGAATTACCGGCCGCCGTTCGATGCCACGGCGGTGAAGAGATTGAAGGAGAGTGGTGGCAT TGTGGCGGGGAAGACTAATTTGGACGAGTTCGGTATGGGGAGTACCACTGAAGGTTCTGGATTTCAGGTGACTGCAAACCCATGGGATGTGTCTCGTGTG CCCGGTGGATCATCAGGAGGATCAGCGGCAGCTGTATCTGCTAGGCAATGCGTAGTTTCGTTGGGAAGTGATACCGGTGGAAGTGTAAGACAGCCTGCAT CATTTTGCGGTGTTGTTGGATTGAAGCCAACATATGGACGAGTCTCTAGATTCGGGCTTATGGCATATGCATCCTCACTGGATGTAATTGGGTGCTTTGG AACATCAGTGGCTGATGCTGGTATTCTTCTGAGTGCAATCGCTGGTCATGACAAGTTCGATGCTACTAGCAGTAAGCAAAAAGTCCCAGACTTTGAATCT CTTTTTGCTTCCATAAATCTGTCGGAGTCTAAACCATTAAGTGGACTGAAAGTGGGTCTTATACGTGAAACCCTTGATGATGGTGTGGACAGTGGAGTAA AGTCGGCGATAAACAATGCTGCTCTGCATATGGAAGAGTTGGGGTGCATCGTCTCTGAGGTCTCATTGCCTTCTTTCTCCCTTGGTTTACCTGCCTACTA TATCCTTGCCTCATCTGAATCATCTTCAAACTTGTCACGTTATGATGGTGTCAGGTATGGAAAGCAAGTTGTTGCTGATGAGTTGAATGGTCTTTATGGG GATTCGAGAGCAAATGGCTTTGGTCCTGAGGTCAAAATGAGAATTTTGATGGGAACATATGCCCTCTCAGCTGGTTATTATGATGCTTACTACAAGCGTG CTCAACAGGTAAGGACATTGATTCGAGAAAGCTTCGACACAGCTTTAGAAAACAATGACATCCTAATTTCTCCCGCTGCTCCATCAGTAGCTTATAAGAT GGGTGAGAAGAAAAACGACCCATTATCGATGTATGCTGGAGACATAATGACTGTAAATGTTAACCTGGCTGGTCTTCCAGCACTGGTTGTTCCTTGTGGA TTTGTAGAAGGAGGGCCTTCAGGGCTTCCGGTCGGTCTCCAAATGATCGGAGCAGCATTTCACGAGGAGAAATTGCTGAAAATTGGACACATCTTTGAGC AGACCCTTCAAGGGTGCAGTTTTGTTCCGCCATTGGTAGCCGATAAGGTTGCCGGCTAG
AA sequence Show only first row Show all	>Lus10007361 pacid=23166238 polypeptide=Lus10007361 locus=Lus10007361.g ID=Lus10007361.BGIv1.0 annot-version=v1.0 MLSTLYPPRSLSRFQLHFTSSVKPRAFAAVAAASSLSGSPPPLTSTQSPEGAPASQILSIRHSLLSRAVTATQLAESYLTRLRLTEPQLNSFIHVSDSVL KVAQEIDARIDRGEEEELGPLAGIIVGVKDNICTADMPSTGGSRILENYRPPFDATAVKRLKESGGIVAGKTNLDEFGMGSTTEGSGFQVTANPWDVSRV PGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRFGLMAYASSLDVIGCFGTSVADAGILLSAIAGHDKFDATSSKQKVPDFES LFASINLSESKPLSGLKVGLIRETLDDGVDSGVKSAINNAALHMEELGCIVSEVSLPSFSLGLPAYYILASSESSSNLSRYDGVRYGKQVVADELNGLYG DSRANGFGPEVKMRILMGTYALSAGYYDAYYKRAQQVRTLIRESFDTALENNDILISPAAPSVAYKMGEKKNDPLSMYAGDIMTVNVNLAGLPALVVPCG FVEGGPSGLPVGLQMIGAAFHEEKLLKIGHIFEQTLQGCSFVPPLVADKVAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25660			Amidase family protein (.1)		Lus10007361 [exp]	0	1
AT2G19870			tRNA/rRNA methyltransferase (S...		Lus10011129 [exp]	1.7	0.9391
AT5G04590		SIR	sulfite reductase (.1)		Lus10027360 [exp]	3.0	0.9439
AT4G37510			Ribonuclease III family protei...		Lus10011533 [exp]	6.3	0.9398
AT3G54090		FLN1	fructokinase-like 1 (.1)		Lus10021118 [exp]	6.5	0.9292
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10039049 [exp]	9.2	0.9236
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Lus10024297 [exp]	9.7	0.9352
AT3G08740			elongation factor P (EF-P) fam...		Lus10022740 [exp]	10.0	0.9356
AT4G39620		ATPPR5, EMB2453	EMBRYO DEFECTIVE 2453, A. THAL...		Lus10036632 [exp]	10.1	0.9294
AT3G54090		FLN1	fructokinase-like 1 (.1)		Lus10017191 [exp]	12.4	0.9279
AT1G79080			Pentatricopeptide repeat (PPR)...		Lus10031791 [exp]	13.0	0.9290

Compare expression of checked genes

Lus10007361 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.