Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37010 95 / 3e-20 unknown protein AT1G65710 90 / 5e-19 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020782 [exp] 675 / 0 AT5G37010 191 / 1e-52 unknown protein Lus10010952 [exp] 181 / 4e-49 AT1G65710 232 / 1e-67 unknown protein Lus10031372 [exp] 149 / 2e-39 AT5G37010 171 / 2e-47 unknown protein Lus10031373 [exp] 65 / 8e-12 AT1G65710 96 / 2e-23 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G145200 [exp] 185 / 4e-50 AT5G37010 212 / 3e-59 unknown protein Potri.015G147900 [exp] 128 / 7e-31 AT5G37010 195 / 3e-53 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007363 pacid=23166228 polypeptide=Lus10007363 locus=Lus10007363.g ID=Lus10007363.BGIv1.0 annot-version=v1.0 ATGGGGACTTGTTTCAGCAAGAAAAGCGCCTCCTTTTCTTCTCCAGCTCCGGCGACGAAAGATTCAGCTCCAGGAGAAACAACGGCGAGGAACGAGGGAG ATTCGAGCTCAAAGAAGAAGGAGATATTCGTCATTAAGCACACCAACAGCTACAGAGAGAGACATCATCAGCCGGAAGTTTCGGATTCCGGTAAAGACGG CGTTACTGTTATTACGAGGGAGAGGACTTCTAGCCGCACCAAGGAAGAGGTGGACGCCATTCTTATCCAGTGTGGCAGGCTGAGCCGGAGCAGCTCTTTT GGTACTCCAGGTAAGAAGTCGGCGGCGGCGAGGAGGAGGCGCAGTGGGTCGAAGAGTAGTTTCGATTTCGATGAGCAGCGTTGCTGGGGAGAAGAAGACG ATGGGGATTTAGGCGGCGATGAAGCGTCGGCGGTGGAGGGAGGGAGTAGAAGGCAGCAGCACCACCGCCACCACAGCCAATCGGGCCGGAATTCGTCTCC GGCTGGAGGGAGGAGGAGGAGGAGGACGCCGAGTAGGGAAAGAGATCAGCAGCGGTCCGGAAGCAGAGAGAGAGATACTGGAACTGGACGGCGAGTTAGT ATATCTCCTGGGAGGAGATCGGCGGGTAATTTGACCGCCGGGGATTGTAGTAATGCTACTAATTCGACGAATAGACCGCCTGGGAAAATGGTATCTGTTC CACCTACAGTTTCTTCCATCAAAGCTTGTGTTGAATCAGCAGCCCCACAGGCTGGAATTAGACGGATTTCTGTTCAGAGGAATGTCGGGGCAGGTTCGCC GAGGTCACAGTCGCCTTCCGGAGTGAAGAACGACTGTATTCATCAGCCATCGCCGAGAAGGAGCTCATCGAGGAAAGTGGAGCATTCGCCTTACAGGAGG AATCCGTTGGCCGATATCAACTCGAATTCGGGGCCGTATCCCCAGTCGAATAGGGAAAAATTCGACAAGAACAATGTTGGAAATGATTGGCAAATGACTG GAAAGGAATCGATCCAGAAGCCAAATCCCTTCCAGCAGACGGCATCTACGTCTGCAACTGAAGAAATTATCAATCCACCGGAACAACAATCACACCCCAG AAGCCGATCGGCAAGGAGATATCGAGACCTGGACATGAATCCGGAATCTTTATTGATTCCACAACCGACCACATACACATCAATGCTGCTGCAAGACATC AACAACTTCCACCACAAGAGCAATCATACCAACAACAACAACAACAGCAGCAGGAACAACAATGAAACCAAGAGCAACATAGTACCGTCGTCATTCAAAC TACCAGATTGTGTGAAGAAGGCGTGCTCGATATTGGAAGCAGTTGCCGATCTCAATTCCACCCCAAGCTCCGACTTGTCATACGAAGAGAAGCAACATTG GAGGGTTCCAATGGCGAGAAAAGAAGACCCATTTCCAGTGGAATCTGAGGTGGTGGAAATGGATGAGACAAGCTTGCACTCGTATGTCACTGAAAGTAGG GGAAGCGGCGGGCTGTTGTCTTGTAGTGGAGTAGAAGAGTCTTCAGGGAGCAACAGCTTCATTGTGCAAGAAAAAGGGCGAAATTCGCATAATTCAGCGG ATTCGGAGAAGAGTTCGAGGTCGAACGTGGTTCCGGTGGGATTGGGGATTGGAATTGGAGGAACAATGGAAGGGTTTAATGGTGAGCAGAGGAATGGAAT TGGGAGAGGTAGGATGGTTGGTGATGGCAATAGGATTCGTCAGCATCTCCTGACAACTACTTGCGTTGCTGCTTCTTCTTCAACGTAG
AA sequence Show only first row Show all	>Lus10007363 pacid=23166228 polypeptide=Lus10007363 locus=Lus10007363.g ID=Lus10007363.BGIv1.0 annot-version=v1.0 MGTCFSKKSASFSSPAPATKDSAPGETTARNEGDSSSKKKEIFVIKHTNSYRERHHQPEVSDSGKDGVTVITRERTSSRTKEEVDAILIQCGRLSRSSSF GTPGKKSAAARRRRSGSKSSFDFDEQRCWGEEDDGDLGGDEASAVEGGSRRQQHHRHHSQSGRNSSPAGGRRRRRTPSRERDQQRSGSRERDTGTGRRVS ISPGRRSAGNLTAGDCSNATNSTNRPPGKMVSVPPTVSSIKACVESAAPQAGIRRISVQRNVGAGSPRSQSPSGVKNDCIHQPSPRRSSSRKVEHSPYRR NPLADINSNSGPYPQSNREKFDKNNVGNDWQMTGKESIQKPNPFQQTASTSATEEIINPPEQQSHPRSRSARRYRDLDMNPESLLIPQPTTYTSMLLQDI NNFHHKSNHTNNNNNSSRNNNETKSNIVPSSFKLPDCVKKACSILEAVADLNSTPSSDLSYEEKQHWRVPMARKEDPFPVESEVVEMDETSLHSYVTESR GSGGLLSCSGVEESSGSNSFIVQEKGRNSHNSADSEKSSRSNVVPVGLGIGIGGTMEGFNGEQRNGIGRGRMVGDGNRIRQHLLTTTCVAASSST

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37010			unknown protein		Lus10007363 [exp]	0	1
AT2G47580		U1A	spliceosomal protein U1A (.1)		Lus10008424 [exp]	3.7	0.8979
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Lus10030746 [exp]	4.7	0.9353
AT5G12930			unknown protein		Lus10031827 [exp]	5.1	0.9247
AT2G23530			Zinc-finger domain of monoamin...		Lus10019647 [exp]	11.7	0.9138
AT4G33400			Vacuolar import/degradation, V...		Lus10042656 [exp]	13.5	0.9226
AT2G42260		PYM, UVI4	POLYCHOME, uv-b-insensitive 4 ...		Lus10008728 [exp]	16.0	0.8941
AT4G12540			unknown protein		Lus10038281 [exp]	17.1	0.8782
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Lus10013226 [exp]	17.9	0.9160
AT2G07170			ARM repeat superfamily protein...		Lus10008545 [exp]	18.3	0.9210
AT4G33400			Vacuolar import/degradation, V...		Lus10021729 [exp]	18.3	0.9211

Compare expression of checked genes

Lus10007363 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.