Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65690 231 / 1e-75 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G36970 219 / 3e-71 NHL25 NDR1/HIN1-like 25 (.1) AT1G54540 159 / 9e-48 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G27080 117 / 2e-31 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) AT5G21130 107 / 1e-27 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G52470 73 / 2e-15 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G53730 71 / 2e-14 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G06320 71 / 3e-14 NHL3 NDR1/HIN1-like 3 (.1) AT3G11650 70 / 7e-14 NHL2 NDR1/HIN1-like 2 (.1) AT3G11660 67 / 3e-13 NHL1 NDR1/HIN1-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020783 [exp] 391 / 1e-138 AT5G36970 229 / 2e-75 NDR1/HIN1-like 25 (.1) Lus10031888 [exp] 160 / 4e-48 AT1G54540 236 / 2e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10031317 [exp] 148 / 2e-43 AT1G54540 231 / 1e-76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021288 [exp] 74 / 2e-15 AT2G35980 237 / 2e-79 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021287 [exp] 72 / 1e-14 AT2G35980 236 / 7e-79 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10016962 [exp] 72 / 1e-14 AT2G35980 237 / 3e-79 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10037638 [exp] 71 / 3e-14 AT1G17620 201 / 4e-64 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10015622 [exp] 67 / 6e-13 AT1G17620 196 / 5e-62 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10000157 [exp] 66 / 9e-13 AT3G52470 164 / 3e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G148200 [exp] 248 / 3e-82 AT5G36970 227 / 2e-74 NDR1/HIN1-like 25 (.1) Potri.012G145500 [exp] 244 / 1e-80 AT5G36970 238 / 2e-78 NDR1/HIN1-like 25 (.1) Potri.017G154000 [exp] 180 / 1e-55 AT1G54540 242 / 1e-80 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.004G067100 [exp] 163 / 4e-49 AT1G54540 203 / 3e-65 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.009G158900 [exp] 141 / 2e-40 AT2G27080 259 / 8e-87 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.004G197600 [exp] 115 / 1e-30 AT2G27080 264 / 8e-89 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.013G135800 [exp] 100 / 3e-25 AT1G65690 112 / 4e-30 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.003G039400 [exp] 83 / 2e-18 AT1G17620 208 / 1e-66 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.009G003800 [exp] 76 / 1e-16 AT5G22870 179 / 4e-57 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G200700 [exp] 74 / 2e-15 AT1G17620 168 / 2e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10007364 pacid=23166254 polypeptide=Lus10007364 locus=Lus10007364.g ID=Lus10007364.BGIv1.0 annot-version=v1.0 ATGGCCGACCAGCACAAGAAGATTCACCCACTGAACTCCAACAATCAAAACGACGACGTAGAAGCGGCCGCCGCGTCCTCCTCCTCATCAGACGCTCCCC ACCATGCTCCAACAGCACCTTTAGTGCCCCGTGGATCATCCAAATCCGACCACGGCGACCCGACCCGGAAAGCTCCGAGTCAAGTACCACCGTACCCTCC ACCAACATACCACGGGGCGAAGCGGCCGAAAAGACGCCGTTCCACCTGTTGCCGATGCTTCTGTTGGATATTCTCAATCCTGCTCTTCCTAGTCATAGCG GTGGGGGCCACAGTGGGGATCCTCTTCCTAATCTTCCGCCCCAAGCTACCTGACGTGTCAATCGACCGGCTGCAAATCGCGCGGTTCGGCCTGACACAAA CCACCCCTGCCACGCTGTCCGCCACGTTTGATGTCACCATCACGGCTAAGAACCCGAACAAGAGGATCGGGATATACTACGAAGGAGGGAGCAGGATCGG AGTTTCGTTCGCGGGTACGCAGCTCTGCCAGGGGGCGCTGCCGAAGTTCTACCAGGGCCACCGGAACACGACGGTGCTGAACGTCCCGCTGACTGGAGAA AGCGCGGACGCGGCGGCGCTGTTTGGGGAGATGCAGAGTGAGCAGCAGAGGAATGGGTTCGTGCCGTTGGATTTGAGGGTTAGGCAGCCTGTGAGGATTA AGCTCGGGAAGCTGAAGCTGCCTAAGATTAAGTTTGTGGTGAGGTGTCGGCTTAACGTGGATAGCTTGACCGCGAATAATAATATCCGGATTAGGAACAG AAGTTGTAAGTTCAGGCTGAGGCTCTGA
AA sequence Show only first row Show all	>Lus10007364 pacid=23166254 polypeptide=Lus10007364 locus=Lus10007364.g ID=Lus10007364.BGIv1.0 annot-version=v1.0 MADQHKKIHPLNSNNQNDDVEAAAASSSSSDAPHHAPTAPLVPRGSSKSDHGDPTRKAPSQVPPYPPPTYHGAKRPKRRRSTCCRCFCWIFSILLFLVIA VGATVGILFLIFRPKLPDVSIDRLQIARFGLTQTTPATLSATFDVTITAKNPNKRIGIYYEGGSRIGVSFAGTQLCQGALPKFYQGHRNTTVLNVPLTGE SADAAALFGEMQSEQQRNGFVPLDLRVRQPVRIKLGKLKLPKIKFVVRCRLNVDSLTANNNIRIRNRSCKFRLRL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65690			Late embryogenesis abundant (L...		Lus10007364 [exp]	0	1
AT1G58420			Uncharacterised conserved prot...		Lus10012496 [exp]	1.4	0.9711
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10013589 [exp]	2.0	0.9652
AT1G74360			Leucine-rich repeat protein ki...		Lus10015729 [exp]	3.5	0.9617
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10015208 [exp]	4.5	0.9620
AT2G35980		NHL10, YLS9, AT...	YELLOW-LEAF-SPECIFIC GENE 9, A...		Lus10021287 [exp]	7.0	0.9603
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10008187 [exp]	9.4	0.9474
AT3G59080			Eukaryotic aspartyl protease f...		Lus10007335 [exp]	9.9	0.9383
					Lus10005525 [exp]	10.1	0.9659
AT2G35980		NHL10, YLS9, AT...	YELLOW-LEAF-SPECIFIC GENE 9, A...		Lus10021288 [exp]	10.7	0.9670
AT1G30700			FAD-binding Berberine family p...		Lus10023375 [exp]	11.6	0.9390

Compare expression of checked genes

Lus10007364 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.