Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02680 198 / 2e-57 ATNBS1, NBS1 nijmegen breakage syndrome 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020784 [exp] 807 / 0 AT3G02680 428 / 7e-144 nijmegen breakage syndrome 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G148300 [exp] 353 / 2e-117 AT3G02680 473 / 4e-163 nijmegen breakage syndrome 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0357 [flax] [poplar] SMAD-FHA PF00498 [flax] [poplar] FHA FHA domain
Representative CDS sequence Show only first row Show all	>Lus10007365 pacid=23166251 polypeptide=Lus10007365 locus=Lus10007365.g ID=Lus10007365.BGIv1.0 annot-version=v1.0 ATGGTCTGGAGTCTGTCCCCTGTGGATCCTCACTCCGGCGAAGCAAATTACTTCATCTTTAGAAAAGGAACCTACAGAGTTGGTCGCAAAGGTTGTGATA TCATAATTACCAAAGACAAAGGAGTTTCACGAGTCCATGCAGAAATAGTTATCGATGAAATGGTTTCCCTGAGTCGACTTCCTGGCGAATCCAACATATC ATCAGCTCATGTTAGGATCAAAGACAGTTCAAAGTACGGAACATTCGTCAACAAGAACCGTGAGTTTAGTGAGAAGGTTCACGAGTTATCCAACAAAGAA ACGTTTTTAAAAGACGGGGACGTTATTTCCTTTGGAACCAGCAATGCTGTATACAGGTTTTCCTTTGTACCCTTTGTCTTCTACACTCATTGTTCTCAGC CCCGTGCAATTCGAGACAAAGTGTTATCAATTGGTGCACATAGCACAACTGACTTCAGTGATGAGTGCACACATGTGCTAGTTGATCAACTCACGCCTGT GAATGGTGCTCTGATCAATGCTATTGTGTATAAGTTTGGTGATAGACTACCTAGTCTTTCAGAAGTAGCTGGCGCAAAGGCTGTTTCTGTTGAAGAATAT TGTTCTAGCAGCCATGACACTTATTACGAAGAAAAGAATAAGGTCATTTGTGTTACTACTAAAGGATCAGCCAACAAACTGGACCATGTCACCGAACTTA GTTCGTTTTCTAGAGTGGACGAAACTGATCTGCTGTGTGCTATTCTTTCCGGACATCTCGATACGTCTATTTTAGTACGACCAACTGTGCACGTATCATT GTCGTCCACGACGGATGAGACAATAGTAGCTGATTCCGAAACAGAAGGAGAAGTCGACACAGTAACATCAGTTCCTGCCAAAGCTAGTAGTACTATCAGC GAAGTTGCTCCGAAATGTGAAAAGATAGAGGAGGTAGTAGCTCTTCCCTTCAACCCTGCCGAAAAAATAGAGGACGAGACGTGTACTGTGCGCTCTGTAC ATGTCGACGGGACGGGCATGACAGCGAAAATAAGGAAGGTTGAATATGAGGATGCTGGAATTGATATCATTTACAGCCAACAGCTGATAGTTAGAGCCTC AAATTCGTCAGCTAATGCGAGATCCACTATTGACAATGGAGTTCCGAATTTCAAATGCTTCAGAAAGAAATGCATGCAGTCTGGGAATAGCTTCAGCAAT CTAGTTCAGTTCTCAAAAGACCCTTACAGAGAGGCCAGCTTTGATAGTACGGAGATCAGAGAGTCGATGAAAGAAGAGAAGAAGCGGAAGCAAATGGAAG CCGCTGCAGAGGACATGTTCAACAACCAAAGGGGGAAAAAGAAGGGCGTGGCTGGTTCCATTCATGGTCTTTTTGCTCGTACCCGCAGATGA
AA sequence Show only first row Show all	>Lus10007365 pacid=23166251 polypeptide=Lus10007365 locus=Lus10007365.g ID=Lus10007365.BGIv1.0 annot-version=v1.0 MVWSLSPVDPHSGEANYFIFRKGTYRVGRKGCDIIITKDKGVSRVHAEIVIDEMVSLSRLPGESNISSAHVRIKDSSKYGTFVNKNREFSEKVHELSNKE TFLKDGDVISFGTSNAVYRFSFVPFVFYTHCSQPRAIRDKVLSIGAHSTTDFSDECTHVLVDQLTPVNGALINAIVYKFGDRLPSLSEVAGAKAVSVEEY CSSSHDTYYEEKNKVICVTTKGSANKLDHVTELSSFSRVDETDLLCAILSGHLDTSILVRPTVHVSLSSTTDETIVADSETEGEVDTVTSVPAKASSTIS EVAPKCEKIEEVVALPFNPAEKIEDETCTVRSVHVDGTGMTAKIRKVEYEDAGIDIIYSQQLIVRASNSSANARSTIDNGVPNFKCFRKKCMQSGNSFSN LVQFSKDPYREASFDSTEIRESMKEEKKRKQMEAAAEDMFNNQRGKKKGVAGSIHGLFARTRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02680		ATNBS1, NBS1	nijmegen breakage syndrome 1 (...		Lus10007365 [exp]	0	1
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10037986 [exp]	1.4	0.8732
AT3G01410			Polynucleotidyl transferase, r...		Lus10014521 [exp]	2.8	0.8603
AT5G20510	Alfin	AL5	alfin-like 5 (.1)		Lus10037655 [exp]	3.2	0.8793
AT3G63240			DNAse I-like superfamily prote...		Lus10014684 [exp]	6.9	0.8421
AT3G44750		HDT1, HDA3, ATH...	HISTONE DEACETYLASE 2A, histon...		Lus10003376 [exp]	7.5	0.8433
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Lus10008855 [exp]	9.2	0.8457
AT5G08180			Ribosomal protein L7Ae/L30e/S1...		Lus10040161 [exp]	10.1	0.8623
AT5G04520			Protein of unknown function DU...		Lus10017450 [exp]	13.1	0.7617
AT3G48425			DNAse I-like superfamily prote...		Lus10043333 [exp]	14.2	0.8069
AT1G74700		NUZ, TRZ1	tRNAse Z1 (.1)		Lus10023618 [exp]	14.7	0.7723

Compare expression of checked genes

Lus10007365 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.