Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06460 118 / 2e-31 ACD31.2, ACD32.1 ALPHA-CRYSTALLIN DOMAIN 31.2, alpha-crystallin domain 32.1 (.1) AT1G07400 52 / 4e-08 HSP20-like chaperones superfamily protein (.1) AT1G59860 50 / 2e-07 HSP20-like chaperones superfamily protein (.1) AT1G53540 44 / 4e-05 HSP20-like chaperones superfamily protein (.1) AT4G27670 42 / 0.0002 HSP21 heat shock protein 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020785 [exp] 444 / 3e-159 AT1G06460 155 / 1e-45 ALPHA-CRYSTALLIN DOMAIN 31.2, alpha-crystallin domain 32.1 (.1) Lus10026262 [exp] 48 / 2e-06 AT4G10250 152 / 5e-47 HSP20-like chaperones superfamily protein (.1) Lus10042408 [exp] 47 / 4e-06 AT4G10250 154 / 1e-47 HSP20-like chaperones superfamily protein (.1) Lus10024225 [exp] 43 / 0.0002 AT1G52560 197 / 4e-63 HSP20-like chaperones superfamily protein (.1.2) Lus10000932 [exp] 41 / 0.0004 AT4G10250 200 / 2e-65 HSP20-like chaperones superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G141500 [exp] 129 / 2e-35 AT1G06460 164 / 3e-49 ALPHA-CRYSTALLIN DOMAIN 31.2, alpha-crystallin domain 32.1 (.1) Potri.009G148000 [exp] 48 / 1e-06 AT2G29500 190 / 7e-63 HSP20-like chaperones superfamily protein (.1) Potri.019G081250 [exp] 46 / 5e-06 AT2G29500 182 / 6e-60 HSP20-like chaperones superfamily protein (.1) Potri.009G049800 [exp] 46 / 5e-06 AT2G29500 152 / 4e-48 HSP20-like chaperones superfamily protein (.1) Potri.004G187400 [exp] 46 / 6e-06 AT1G07400 193 / 7e-64 HSP20-like chaperones superfamily protein (.1) Potri.009G049900 [exp] 45 / 1e-05 AT2G29500 154 / 2e-48 HSP20-like chaperones superfamily protein (.1) Potri.004G187450 [exp] 44 / 3e-05 AT2G29500 221 / 5e-75 HSP20-like chaperones superfamily protein (.1) Potri.009G147900 [exp] 44 / 3e-05 AT2G29500 193 / 5e-64 HSP20-like chaperones superfamily protein (.1) Potri.009G039200 [exp] 44 / 4e-05 AT1G07400 201 / 3e-67 HSP20-like chaperones superfamily protein (.1) Potri.004G187202 [exp] 42 / 0.0001 AT2G29500 209 / 1e-70 HSP20-like chaperones superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [flax] [poplar] HSP20 PF00011 [flax] [poplar] HSP20 Hsp20/alpha crystallin family
Representative CDS sequence Show only first row Show all	>Lus10007366 pacid=23166215 polypeptide=Lus10007366 locus=Lus10007366.g ID=Lus10007366.BGIv1.0 annot-version=v1.0 ATGGATACCGAAATGGCCGCTAGCCGGAGGATGAAGGTCGTCGCCGGCCACTTCTATCCCGCCGCCGACGAACTCTGTCCACCTCCACATACCGCCGCCT CCGCCTGCCTCCTCCTGATGAACTGCAGCAGCAATGTATTGAACACAGTTATGCCGCCGCGGTGGAGGTGCGATAATCGGACCTACTTCGCACGCCAGAG TTCATCTTCCCAGTCTTTCTTCATGCGGCAGCAGCAGGCTCCTTCTCCACGGCAAGGCTGTGGAGTGATAAAGCAAGAAAGGCCTCTCCGATCCGCGAAC GGAACGGCGCCCAGTGCGCCGTTATTTTCGCGACCTAGAACCGCCTCAGATCCGAACTTCTGCAGGCAGGCAGCGGCAGCGCCTTCAACTAGAAACTTCA TTCATAGCTCCCGGATGTACGAACTCCCAGAACACTCAAGGCCATGCTCTTCGTCACCGGTTTCCAGCCTCCTCCTCCCTGAATTCGCCAAGCCGGCAAC CGTGGATGGACGCAGGAGCACCAGAGCGAAACAGTCTCCGGCCAGTGCTGAATCCAAGTGTTCTTCGCGATCTAGTGGAAATGGATGGTCACCGAAGATG GACGTGAGTGAATCTGCTGGATATTTCCTCGTGACAGTTGAAATCCCCGGCGGAGACATTCGTGACATGCGAGTGGAGGTCGATGACCACAATTTGAAAA TAATGGGGAAGAAGTGCTTACCAGCCATGACACAGCCAACATACCACAGGAGAGAGATCTTGCAAGGTCCATACCAGATTCTGTGGCCACTTCCTTCTTG TTCCAACAAGGACTCCGTCTCAGCTGAGTTCGTGAATGGACTTCTGCATATTACTGTGCCGAAGCTTTAA
AA sequence Show only first row Show all	>Lus10007366 pacid=23166215 polypeptide=Lus10007366 locus=Lus10007366.g ID=Lus10007366.BGIv1.0 annot-version=v1.0 MDTEMAASRRMKVVAGHFYPAADELCPPPHTAASACLLLMNCSSNVLNTVMPPRWRCDNRTYFARQSSSSQSFFMRQQQAPSPRQGCGVIKQERPLRSAN GTAPSAPLFSRPRTASDPNFCRQAAAAPSTRNFIHSSRMYELPEHSRPCSSSPVSSLLLPEFAKPATVDGRRSTRAKQSPASAESKCSSRSSGNGWSPKM DVSESAGYFLVTVEIPGGDIRDMRVEVDDHNLKIMGKKCLPAMTQPTYHRREILQGPYQILWPLPSCSNKDSVSAEFVNGLLHITVPKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06460		ACD31.2, ACD32....	ALPHA-CRYSTALLIN DOMAIN 31.2, ...		Lus10007366 [exp]	0	1
AT2G46100			Nuclear transport factor 2 (NT...		Lus10036387 [exp]	1.0	0.9442
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Lus10038020 [exp]	2.4	0.9316
AT5G48485		DIR1	DEFECTIVE IN INDUCED RESISTANC...		Lus10039511 [exp]	4.5	0.9272
AT3G24420			alpha/beta-Hydrolases superfam...		Lus10017735 [exp]	4.7	0.9392
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10028616 [exp]	5.5	0.9255
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Lus10002979 [exp]	5.9	0.9255
AT4G33040			Thioredoxin superfamily protei...		Lus10024982 [exp]	6.9	0.9312
					Lus10016041 [exp]	6.9	0.9251
AT5G48370			Thioesterase/thiol ester dehyd...		Lus10002148 [exp]	7.7	0.9038
AT1G07230		NPC1	non-specific phospholipase C1 ...		Lus10005860 [exp]	7.9	0.8879

Compare expression of checked genes

Lus10007366 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.