Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65890 695 / 0 AAE12 acyl activating enzyme 12 (.1) AT1G65880 691 / 0 BZO1 benzoyloxyglucosinolate 1 (.1) AT1G66120 677 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G20560 562 / 0 AAE1 acyl activating enzyme 1 (.1.2) AT1G68270 557 / 0 AMP-dependent synthetase and ligase family protein (.1) AT5G16370 554 / 0 AAE5 acyl activating enzyme 5 (.1) AT2G17650 553 / 0 AMP-dependent synthetase and ligase family protein (.1) AT5G16340 548 / 0 AMP-dependent synthetase and ligase family protein (.1) AT3G16910 528 / 0 AAE7, ACN1 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) AT1G21530 523 / 0 AMP-dependent synthetase and ligase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020787 [exp] 1000 / 0 AT1G65890 727 / 0.0 acyl activating enzyme 12 (.1) Lus10010956 [exp] 840 / 0 AT1G65890 696 / 0.0 acyl activating enzyme 12 (.1) Lus10031367 [exp] 694 / 0 AT1G65890 548 / 0.0 acyl activating enzyme 12 (.1) Lus10016011 [exp] 587 / 0 AT1G20560 846 / 0.0 acyl activating enzyme 1 (.1.2) Lus10028375 [exp] 573 / 0 AT2G17650 793 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10039161 [exp] 560 / 0 AT5G16370 781 / 0.0 acyl activating enzyme 5 (.1) Lus10016869 [exp] 540 / 0 AT3G16910 902 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10037734 [exp] 540 / 0 AT3G16910 897 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10016870 [exp] 532 / 0 AT3G16910 918 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G082000 [exp] 839 / 0 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.017G138350 [exp] 822 / 0 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.017G138451 [exp] 816 / 0 AT1G65880 730 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.016G034800 [exp] 800 / 0 AT1G66120 692 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.006G036300 [exp] 790 / 0 AT1G66120 687 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.006G036200 [exp] 773 / 0 AT1G66120 668 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.002G010600 [exp] 603 / 0 AT1G20560 823 / 0.0 acyl activating enzyme 1 (.1.2) Potri.005G250700 [exp] 595 / 0 AT1G20560 790 / 0.0 acyl activating enzyme 1 (.1.2) Potri.005G099500 [exp] 574 / 0 AT2G17650 800 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.015G148500 [exp] 560 / 0 AT5G16370 760 / 0.0 acyl activating enzyme 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10007369 pacid=23166198 polypeptide=Lus10007369 locus=Lus10007369.g ID=Lus10007369.BGIv1.0 annot-version=v1.0 ATGGACCAGCTTCCCAAGTGTGGTGCAAACTTCGTGGCACTGACCCCGACCACCTTCCTCAAAAGGGCGGCTCAAGTCTACTCTGACCGCACCTCCATCA TCTACGACCGCACTCGCTTCACCTGGCTGCAAACCTACACCCGCTGCTGCCGTCTCGCCTCTTCTCTCCGATCCCTCAACATCTCCCACGACGACGTCGT TTCTGTCCTGGCTCCCAACGTTCCGGCCATGTACGAGATGCACTTCGCTGTCCCCATGGCCGGAGCTGTCCTCAACCCGATCAACACCAGGCTCGACGCC AACACTGTGGCCACCATCCTCTCCCACTCTACTGCCAAGTTGTTTTTCGTCGATTGCGAGTTCGTCCCCTTGGCGAAGAAGGCCTTGAACCTACTGATGA AGAATAGTTCTTCATCGGGAGTACAACTTCCTTTGGTGGTTGTTATTGATGATATCGACTCCCCGACTGGTGTCCGTTTGGGAGAGCTGGAGTACGAGCA GCTGGTTCTGAACGGGGACCTTCACTTCGTCCCCCAAGAGATTCGGGACGAATGGGATCCCATCACTTTGAATTATACATCTGGGACCACATCGGCTCCG AAGGGAGTTGTGTACAGTCACAGGGGTGCTTATCTGAGCACGCTCAGCTTGATACTGGGTTGGGAGATGGGAAGCGAGCCTGTTTACTTATGGTCGCTCC CTATGTTTCACTGTAACGGGTGGACGTTCACGTGGGGGGTCGCAGCTCGGGGAGGCACCAACGTGTGCCTCCGTAACACAACTGCTTTAGACATTTATCG TAGTATCGCGGTCCACAAGGTTACTCACATGTGTTGTGCGCCTATCGTGTTCAACATCATCCTCGATGCCAAGCCACATGAGATTCGCCAGCTGACTTCC CCTATCAACGTCCTCATGGGAGGGGCCCCACCTCCGGCTTCTTTGTTGGAAAAAGTCGAGCCGATGGGGTTCAACGTGACTCATGCCTACGGGCTGACCG AGGCCACCGGGCCCGCTTTGGTTTGCGAGTGGCAGGCCCAGTGGGACAGCCTCCCTAGTAACGAACGCGGGAGGCTCAAGGCCAGACAAGGAGTGAGCAT TTTGGGACTGGCTGACGTGGACGTCAAAGATTTGAACACCATGAGGAGCGTACCACGTGACGGCAAAGTGATGGGGGAGATCGTCCTACGTGGAAGCAGC ATCATGAAAGGCTATTTCAAAGACGAGAAGGCCACGTCGGAAGCCTTCAAGAACGGGAAGTGGTTCGCCACCGGTGACGTCGGTGTGGTCCACCCGGATG GCTACGTGGAGATCAAGGACAGGTCGAAGGACGTCATCATCTCTGGCGGCGAGAACATAAGCAGCGTGGAGGTGGAGTCGGTGCTCTACCGCCACCCGAA GATCGCGGAGGCGGCGGTGGTGGCGATGCCTCATCCGATTTGGGGGGAGAGCCCCTGCGCCTTCGTGGCGGTGAAGAATAATGATAACACCGCCACTGCC ACGGCGGAGGAGGAGACAGAGATACTGAGCTTCTGCCGGAGTAACATGGCGCATTTCATGGTGCCGAAGAAGGTGGTGTTCATGCCGGAGCTGCCGAAGA CGGGCACTGGAAAGATTCAGAAGGCACAGTTGAGGGAAGCGGCGAAGAAGGTGGTCGATGCGGCGGTGGAGGAAGAGAAGAAGCGGAAGATTAACAAGAA TAATAATGGTGCGGCTGGGAGGAAGAACGGCGGCGGTCAAGGAGGAGTCAACGGTAAAGCGAGTTTGCCGGGGTATGGGTCTCGGCCTCATGAGCATATA CAGGCGTTGTCTCGTCTTTGA
AA sequence Show only first row Show all	>Lus10007369 pacid=23166198 polypeptide=Lus10007369 locus=Lus10007369.g ID=Lus10007369.BGIv1.0 annot-version=v1.0 MDQLPKCGANFVALTPTTFLKRAAQVYSDRTSIIYDRTRFTWLQTYTRCCRLASSLRSLNISHDDVVSVLAPNVPAMYEMHFAVPMAGAVLNPINTRLDA NTVATILSHSTAKLFFVDCEFVPLAKKALNLLMKNSSSSGVQLPLVVVIDDIDSPTGVRLGELEYEQLVLNGDLHFVPQEIRDEWDPITLNYTSGTTSAP KGVVYSHRGAYLSTLSLILGWEMGSEPVYLWSLPMFHCNGWTFTWGVAARGGTNVCLRNTTALDIYRSIAVHKVTHMCCAPIVFNIILDAKPHEIRQLTS PINVLMGGAPPPASLLEKVEPMGFNVTHAYGLTEATGPALVCEWQAQWDSLPSNERGRLKARQGVSILGLADVDVKDLNTMRSVPRDGKVMGEIVLRGSS IMKGYFKDEKATSEAFKNGKWFATGDVGVVHPDGYVEIKDRSKDVIISGGENISSVEVESVLYRHPKIAEAAVVAMPHPIWGESPCAFVAVKNNDNTATA TAEEETEILSFCRSNMAHFMVPKKVVFMPELPKTGTGKIQKAQLREAAKKVVDAAVEEEKKRKINKNNNGAAGRKNGGGQGGVNGKASLPGYGSRPHEHI QALSRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65890		AAE12	acyl activating enzyme 12 (.1)		Lus10007369 [exp]	0	1
AT3G02210		COBL1	COBRA-like protein 1 precursor...		Lus10012598 [exp]	102.6	0.6439
AT3G18950			Transducin/WD40 repeat-like su...		Lus10027944 [exp]	124.9	0.6414
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10036016 [exp]	158.4	0.6388
AT4G22570		APT3	adenine phosphoribosyl transfe...		Lus10024612 [exp]	214.6	0.6405

Compare expression of checked genes

Lus10007369 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.