Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17310 763 / 0 AtUGP2, UGP2 UDP-glucose pyrophosphorylase 2 (.1.2) AT3G03250 748 / 0 AtUGP1, UGP1, UGP UDP-GLUCOSE PYROPHOSPHORYLASE 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020788 [exp] 885 / 0 AT5G17310 781 / 0.0 UDP-glucose pyrophosphorylase 2 (.1.2) Lus10010957 [exp] 726 / 0 AT3G03250 676 / 0.0 UDP-GLUCOSE PYROPHOSPHORYLASE 1 (.1) Lus10031365 [exp] 711 / 0 AT3G03250 662 / 0.0 UDP-GLUCOSE PYROPHOSPHORYLASE 1 (.1) Lus10041971 [exp] 306 / 2e-94 AT5G17310 332 / 6e-107 UDP-glucose pyrophosphorylase 2 (.1.2) Lus10031368 [exp] 66 / 4e-13 AT3G03250 49 / 3e-08 UDP-GLUCOSE PYROPHOSPHORYLASE 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G144700 [exp] 775 / 0 AT5G17310 782 / 0.0 UDP-glucose pyrophosphorylase 2 (.1.2) Potri.004G074400 [exp] 767 / 0 AT5G17310 759 / 0.0 UDP-glucose pyrophosphorylase 2 (.1.2) Potri.013G070001 [exp] 370 / 3e-119 AT3G03250 375 / 9e-124 UDP-GLUCOSE PYROPHOSPHORYLASE 1 (.1) Potri.004G074750 [exp] 228 / 1e-71 AT5G17310 222 / 2e-72 UDP-glucose pyrophosphorylase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01704 [flax] [poplar] UDPGP UTP--glucose-1-phosphate uridylyltransferase
Representative CDS sequence Show only first row Show all	>Lus10007370 pacid=23166208 polypeptide=Lus10007370 locus=Lus10007370.g ID=Lus10007370.BGIv1.0 annot-version=v1.0 ATGGCCGCTGCTGCCACTGAGAAGCTCTCCGCCTTGAAACCTGCAGTAGCAGCTCTCGATCAGATCAGCGAGAGTGAGAAGAATGGATTCATCAACCTCG TTTCGCGCTATGTCAGTGGCGAAGCAGAGCATGTGGAGTGGAGTAAGATTCAGACCCCGACTGATGAGATAGTGGTTCCTTATGACACCTTGGCTCCTCT CTCTGATGATCCAGCGGAAACCAAAAGTCTTCTCGATAAACTAGTTGTGCTGAAGCTGAATGGTGGTTTGGGAACAACGATGGGTTGTACTGGACCTAAA TCTGTGATTGAAGTCCGTAATGGACTGACGTTCCTTGACCTCATTGTCATGCAGATTGAGAATCTCAATAACAAATACGGATGCAAGGTTCCTCTGCTTT TGATGAACTCATTCAACACCCACGATGATACAGCAAAGATAGTGGAGAAGTACACAAGTTCAAATGTAGAGATTCATACATTTAATCAGAGTCAGTACCC ACGTTTGGTTACTGATGATTTCCTGCCACTACCAAGCAAGGGGCATGCAGGCAAGGATGGATGGTATCCTCCTGGACATGGCGATGTTTTCCCATCCTTG AAGAATAGCGGCAAGCTTGATGCGTTATTGTCTCAGATTGGATCTAGTTATACTCCGGAAATGGCCGCTGCTGCCACTGAGAAGCTCTCCGCCTTGAAAC CTGCAGTAGCAGCTCTCGATCAGATCAGCGAGAGTGAGAAGAATGGATTCATCAACCTCGTTTCGCGCTATGTCAGTGGCGAAGCAGAGCATGTGGAGTG GAGTAAGATTCAGACCCCGACTGATGAGATAGTGGTTCCTTATGACACCTTGGCTCCTCTCTCTGATGATCCAGCGGAAACCAAAAGTCTTCTCGATAAA CTAGTCGTGCTGAAGCTGAATGGTGGTTTGGGAACAACGATGGGTTGTACTGGACCTAAATCTGTGATTGAAGTCCGTAATGGACTGACGTTCCTTGACC TCATTGTCATGCAGATTGAGAATCTCAATAACAAATACGGATGCAAGGTTCCTCTGCTTTTGATGAACTCATTCAACACCCACGATGATACAGCAAAGAT TGTGGAGAAGTACACAAGTTCAAATGTAGAGATTCATACATTTAATCAGAGTCAGTACCCACGTTTGGTTACTGATGATTTCCTGCCACTACCAAGCAAG GGGCATGCAGGCAAGGATGGATGGTATCCTCCTGGACATGGCGATGTTTTCCCATCCTTGAAGAATAGCGGCAAGCTTGATGCGTTATTGTCTCAGGGGA AAGAGTACGTGTTTGTCGCCAACTCAGACAACCTTGGAGCTGTCGTGGATTTGAAGATTCTAAGCCACTTGATAAAAAACAAGAATGAGTACTGCATGGA GGTAACACCCAAAACATTGGCAGATGTGAAGGGTGGTACCCTCATTTCTTATGATGGGAAAGTTCAGCTTCTGGAAATAGCACAGGTCCCTGATGAGCAT GTTGGTGAGTTCAAGTCCATTGAGAAGTTCAAAATTTTCAACACAAACAACTTGTGGGTTAACTTGAATGCGATCAAGAGGCTTGTGGAAGCTGATGCTC TAAAAATGGAGATCATTCCCAACCCCAAGGAAGTTGAAGGTATCAAGGTTCTTCAGCTAGAAACAGCTGCTGGTGCAGCAATTAAGTTTTTCCACAAGGC AATTGGCATCAATGTGCCTCGCTCACGTTTCCTTCCTGTCAAGGCAACTTCAGATTTGCTTCTTGTCCAGTCCGACCTGTACACCGTGGTGGATGGGTAT GTCGTTCGCAACGAGGCCAGAAAGAATCCTCAGAATCCCTCCATTGAACTTGGCCCCGAGTTCAAGAAGGTTGGCGACTTCTTGAGCCGATTCAAGTCCA TCCCCAGCATCATTGAGCTTGATAGTCTTAAGGTTGTGGGTGATGTATGGTTTGGCCTTGGGATTACACTCAAGGGGAAGGTGACCATTAAAGCTGCGGA GAAGCTGGAAATCCCCGATGGTTCTAACATTGAGAACAAGGACATCAATGGCAAAGGAGATCTGTAG
AA sequence Show only first row Show all	>Lus10007370 pacid=23166208 polypeptide=Lus10007370 locus=Lus10007370.g ID=Lus10007370.BGIv1.0 annot-version=v1.0 MAAAATEKLSALKPAVAALDQISESEKNGFINLVSRYVSGEAEHVEWSKIQTPTDEIVVPYDTLAPLSDDPAETKSLLDKLVVLKLNGGLGTTMGCTGPK SVIEVRNGLTFLDLIVMQIENLNNKYGCKVPLLLMNSFNTHDDTAKIVEKYTSSNVEIHTFNQSQYPRLVTDDFLPLPSKGHAGKDGWYPPGHGDVFPSL KNSGKLDALLSQIGSSYTPEMAAAATEKLSALKPAVAALDQISESEKNGFINLVSRYVSGEAEHVEWSKIQTPTDEIVVPYDTLAPLSDDPAETKSLLDK LVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVMQIENLNNKYGCKVPLLLMNSFNTHDDTAKIVEKYTSSNVEIHTFNQSQYPRLVTDDFLPLPSK GHAGKDGWYPPGHGDVFPSLKNSGKLDALLSQGKEYVFVANSDNLGAVVDLKILSHLIKNKNEYCMEVTPKTLADVKGGTLISYDGKVQLLEIAQVPDEH VGEFKSIEKFKIFNTNNLWVNLNAIKRLVEADALKMEIIPNPKEVEGIKVLQLETAAGAAIKFFHKAIGINVPRSRFLPVKATSDLLLVQSDLYTVVDGY VVRNEARKNPQNPSIELGPEFKKVGDFLSRFKSIPSIIELDSLKVVGDVWFGLGITLKGKVTIKAAEKLEIPDGSNIENKDINGKGDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17310		AtUGP2, UGP2	UDP-glucose pyrophosphorylase ...		Lus10007370 [exp]	0	1
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10030820 [exp]	2.6	0.9170
AT3G08670			unknown protein		Lus10021382 [exp]	4.2	0.8821
AT3G53390			Transducin/WD40 repeat-like su...		Lus10026500 [exp]	4.6	0.8561
AT5G11520		YLS4, ASP3	YELLOW-LEAF-SPECIFIC GENE 4, a...		Lus10011101 [exp]	4.7	0.9008
AT1G68140			Protein of unknown function (D...		Lus10020957 [exp]	5.3	0.8470
AT5G47540			Mo25 family protein (.1)		Lus10039045 [exp]	5.4	0.8466
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Lus10016538 [exp]	7.5	0.8806
AT5G11520		YLS4, ASP3	YELLOW-LEAF-SPECIFIC GENE 4, a...		Lus10043222 [exp]	8.8	0.8710
AT5G48560	bHLH	bHLH078	basic helix-loop-helix (bHLH) ...		Lus10002337 [exp]	9.2	0.8659
AT3G54690		SETH3	Sugar isomerase (SIS) family p...		Lus10033902 [exp]	9.9	0.8387

Compare expression of checked genes

Lus10007370 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.