Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55690 100 / 1e-24 MADS MADS-box transcription factor family protein (.1) AT5G58890 93 / 1e-21 MADS AGL82 AGAMOUS-like 82 (.1) AT4G11250 68 / 7e-13 MADS AGL52 AGAMOUS-like 52 (.1) AT3G18650 63 / 7e-11 MADS AGL103 AGAMOUS-like 103 (.1) AT5G27960 60 / 4e-10 MADS AGL90 AGAMOUS-like 90 (.1) AT5G26580 60 / 5e-10 MADS AGL34 AGAMOUS-like-34 (.1) AT5G65330 59 / 8e-10 MADS AGL78 AGAMOUS-like 78 (.1) AT1G65300 59 / 1e-09 MADS AGL38, PHE2 PHERES2, AGAMOUS-like 38 (.1) AT5G26650 59 / 1e-09 MADS AGL36 AGAMOUS-like 36 (.1) AT3G05860 57 / 2e-09 MADS MADS-box transcription factor family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020789 [exp] 536 / 0 AT5G58890 91 / 9e-21 AGAMOUS-like 82 (.1) Lus10014095 [exp] 192 / 2e-58 AT5G55690 87 / 3e-19 MADS-box transcription factor family protein (.1) Lus10019819 [exp] 188 / 9e-57 AT5G55690 83 / 7e-18 MADS-box transcription factor family protein (.1) Lus10022316 [exp] 64 / 1e-11 AT5G48670 131 / 2e-36 AGAMOUS-like 80 (.1) Lus10014883 [exp] 61 / 2e-10 AT5G48670 114 / 1e-29 AGAMOUS-like 80 (.1) Lus10014578 [exp] 60 / 4e-10 AT5G48670 182 / 5e-56 AGAMOUS-like 80 (.1) Lus10000974 [exp] 57 / 2e-09 AT5G26650 93 / 3e-24 AGAMOUS-like 36 (.1) Lus10041548 [exp] 52 / 5e-09 AT3G61120 92 / 6e-25 AGAMOUS-like 13 (.1) Lus10012545 [exp] 52 / 6e-09 AT3G61120 92 / 1e-24 AGAMOUS-like 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G255700 [exp] 176 / 5e-52 AT5G55690 112 / 3e-28 MADS-box transcription factor family protein (.1) Potri.012G109900 [exp] 172 / 1e-50 AT5G55690 112 / 2e-28 MADS-box transcription factor family protein (.1) Potri.001G329800 [exp] 162 / 7e-47 AT5G55690 64 / 2e-11 MADS-box transcription factor family protein (.1) Potri.001G214900 [exp] 120 / 2e-31 AT5G55690 94 / 4e-22 MADS-box transcription factor family protein (.1) Potri.013G107600 [exp] 66 / 4e-13 AT1G22590 117 / 9e-34 AGAMOUS-like 87 (.1.2) Potri.016G068132 [exp] 58 / 8e-10 AT5G48670 125 / 1e-34 AGAMOUS-like 80 (.1) Potri.005G002400 [exp] 59 / 1e-09 AT5G48670 222 / 4e-71 AGAMOUS-like 80 (.1) Potri.006G201700 [exp] 59 / 2e-09 AT5G48670 120 / 2e-30 AGAMOUS-like 80 (.1) Potri.007G113800 [exp] 57 / 2e-09 AT5G60440 191 / 4e-60 AGAMOUS-like 62 (.1) Potri.009G084200 [exp] 55 / 8e-09 AT5G60440 211 / 2e-68 AGAMOUS-like 62 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10007371 pacid=23166210 polypeptide=Lus10007371 locus=Lus10007371.g ID=Lus10007371.BGIv1.0 annot-version=v1.0 ATGGGGCACAAGAGAGTGAAGATGGAGCTTATCAAGAACGAAAGAAACCGAAGCAACACTTACAAGAAAAGAAAGGCCAACTTGCTCAAGAAGATGGAAG AGTTCTCCATCCTCTGCGGCGTCGAAGCCTGTCTTATCGTGTTCCAACCGCCCAACCTGACTGAGGACGGAGCAGATCAGCTACAGACGTGGCCGCCCGA TCGTGATTCCGTAGCCGCGACGATCCAACGGTACAGGACGTCTGAAGGCCCCAAGAGATGCTACCATCTCTCGGATTACTTCTCGGAGAAGAAGAAAAGG GTCGGCGTCGAACTGTCCAAGATCAACAAGCTGATTTATAGCCGCAAATTCCCCACCTGGGACGCTCGCATCGACCGGTTCTCGGCTGATCAGCTCAAGA CCCTGCTCGGGCAGCTGGATTCGGAGATCGAAACCGCGGATCAGAAGCTTGAGAGTTTCAATCAAATTCTTGATCATGATCAGTTTCTGGTTCCTGTCAG GAATTTTGAGCAATTCGGGTTAGCATCAGATTATTATGGTAATGGTTTCCAGCAGGTTTACTGCAATGACCAGAGCTTGCAATTCGGTCATGATCAGAGT TCTTTCATGGCGATGTTGAATCCGAATTACTTCAGCAGCCTCTACTGGGATCAGGTTAACAATTTCGGTTATTATGATGATCCGTCACTTAATAACCTGG ATAATATTGGTACCGAATTGATTCTGAGTCCTGAAAATTTGAGCACCATCAATTTCGAGCCTTTTGGGCATCATCATCTGGCGAACCAACCTGACAGCCA AATGGTCGCGGCCAAGGTCGAGAACGAAACGAGGAGATTCGGAGTGTACGGTGGCGGCGAGCAGAGTATGGTGACGTCATCATATGATTCTTCTTCTATG GAGTTTGGCGAGTGCGGGATGATGAGTTACATAAATTCAGGTTAA
AA sequence Show only first row Show all	>Lus10007371 pacid=23166210 polypeptide=Lus10007371 locus=Lus10007371.g ID=Lus10007371.BGIv1.0 annot-version=v1.0 MGHKRVKMELIKNERNRSNTYKKRKANLLKKMEEFSILCGVEACLIVFQPPNLTEDGADQLQTWPPDRDSVAATIQRYRTSEGPKRCYHLSDYFSEKKKR VGVELSKINKLIYSRKFPTWDARIDRFSADQLKTLLGQLDSEIETADQKLESFNQILDHDQFLVPVRNFEQFGLASDYYGNGFQQVYCNDQSLQFGHDQS SFMAMLNPNYFSSLYWDQVNNFGYYDDPSLNNLDNIGTELILSPENLSTINFEPFGHHHLANQPDSQMVAAKVENETRRFGVYGGGEQSMVTSSYDSSSM EFGECGMMSYINSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55690	MADS		MADS-box transcription factor ...		Lus10007371 [exp]	0	1
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10001062 [exp]	3.5	0.9137
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10041951 [exp]	4.9	0.9436
AT5G39650		DAU2	DUO1-activated unknown 2, Prot...		Lus10012821 [exp]	9.2	0.9393
AT1G14205			Ribosomal L18p/L5e family prot...		Lus10012820 [exp]	11.5	0.9329
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10019915 [exp]	14.5	0.9250
AT1G14550			Peroxidase superfamily protein...		Lus10024207 [exp]	15.6	0.9208
AT2G43610			Chitinase family protein (.1)		Lus10025948 [exp]	21.8	0.8964
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10012583 [exp]	21.9	0.9351
AT3G53270			Small nuclear RNA activating c...		Lus10001478 [exp]	25.2	0.8617
AT1G55230			Family of unknown function (DU...		Lus10039191 [exp]	25.8	0.8927

Compare expression of checked genes

Lus10007371 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.