Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73370 1195 / 0 ATSUS6, SUS6 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) AT5G37180 1168 / 0 ATSUS5, SUS5 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1) AT4G02280 935 / 0 ATSUS3, SUS3 sucrose synthase 3 (.1) AT5G49190 902 / 0 ATSUS2, SSA, SUS2 SUCROSE SYNTHASE FROM ARABIDOPSIS, sucrose synthase 2 (.1) AT3G43190 881 / 0 ATSUS4, SUS4 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) AT5G20830 879 / 0 ASUS1, ATSUS1, SUS1 sucrose synthase 1 (.1.2) AT1G04920 148 / 2e-36 ATSPS3F sucrose phosphate synthase 3F (.1) AT5G20280 138 / 2e-33 SPSA1, ATSPS1F sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) AT4G10120 137 / 6e-33 ATSPS4F Sucrose-phosphate synthase family protein (.1.2) AT5G11110 137 / 9e-33 SPSA2, KNS2, ATSPS2F, SPS1 sucrose-phosphate synthase A2, SUCROSE PHOSPHATE SYNTHASE 1, KAONASHI 2, sucrose phosphate synthase 2F (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020791 [exp] 1678 / 0 AT1G73370 1200 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10041979 [exp] 1156 / 0 AT1G73370 1190 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10017984 [exp] 1088 / 0 AT1G73370 1117 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10001468 [exp] 915 / 0 AT4G02280 1385 / 0.0 sucrose synthase 3 (.1) Lus10020506 [exp] 901 / 0 AT3G43190 1420 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Lus10012454 [exp] 868 / 0 AT3G43190 1374 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Lus10010308 [exp] 852 / 0 AT5G49190 1318 / 0.0 SUCROSE SYNTHASE FROM ARABIDOPSIS, sucrose synthase 2 (.1) Lus10013417 [exp] 489 / 5e-162 AT4G02280 1162 / 0.0 sucrose synthase 3 (.1) Lus10008205 [exp] 344 / 3e-111 AT4G02280 466 / 2e-159 sucrose synthase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G139100 [exp] 1359 / 0 AT5G37180 1231 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1) Potri.004G081300 [exp] 1343 / 0 AT1G73370 1234 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.015G029100 [exp] 1246 / 0 AT1G73370 1289 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.012G037200 [exp] 1242 / 0 AT1G73370 1284 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.002G202300 [exp] 941 / 0 AT4G02280 1439 / 0.0 sucrose synthase 3 (.1) Potri.018G063500 [exp] 905 / 0 AT3G43190 1410 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Potri.006G136700 [exp] 898 / 0 AT3G43190 1375 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Potri.006G064300 [exp] 148 / 2e-36 AT5G20280 1625 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.018G025100 [exp] 144 / 4e-35 AT5G20280 1472 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.013G095500 [exp] 144 / 5e-35 AT4G10120 1513 / 0.0 Sucrose-phosphate synthase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1 CL0113 [flax] [poplar] GT-B PF00862 [flax] [poplar] Sucrose_synth Sucrose synthase
Representative CDS sequence Show only first row Show all	>Lus10007372 pacid=23166195 polypeptide=Lus10007372 locus=Lus10007372.g ID=Lus10007372.BGIv1.0 annot-version=v1.0 ATGGCGAGCTTGAAGAGGTCGGACTCAATAGCTGACAACATGCCGGAGGCCCTGAGGCAGAGCAGGTACCACATGAAGAAGTGCTTTGCCAAGTACGTTT CGAAAGGCAGGCGGATCATGAAGCTTCAGCAGCTCCTCGACGAGATGGACAATGTCATCGAGGATATCCCCGAACGCAGGCGCCTCTTTGAGGGCCTACT CGGCGACATCTGGCACTCCACTCAGGAAGCTGTTGTGAACCCACCTTATGTCGCGTTTGCTATCAGGCCAAGTCCCGGATTCTGGGAGTACGTGAAGGTC AGCTCTCAGGACCTGTCAGTTGAAGGAGTCACTTCGACCGAATACCTCAAGTACAAGGAGTTGATCTACGACCAGAATTGGTCGGAGGATGAGCAGGCGC TGGAGCTGGATTTCGGAGCTTTTGAACCTTCTGTTCCACACTTGACACTTTCGTCTTCCATTGGGAGTGGGATGAATTTCGTGTCCAAGTTCATCACTTC CAATCTCAGTGGGAAGCCTGAGAATGCTCAGCCTCTGGTGGATTACTTGCTTTCCCTCAATCATCACGGACAAAATCTGATGATAAATGAGGCTCTGAGT ACAGCTTCAAAGCTCCAGATGGCACTCATTGTTGCAGAGGTTCACCTGTCAGGAATCCCCGAGGATACTCCTTACGACAAATTCGAGCTCAGCTTGAAGG AGTGGGGGATGGAGAGAGGATGGGGAGACACAGCGAAGACAGTGAAGGAAACGATGAGATACCTCTCTGAAGTGATGCAAGCACCGGACCCGATCAACAT GGAGAGATTCTTCAGCAGCAGTCCGACGGTGTTCAACGTTGTTGTCTTCTCCCCTCACGGTTACTTCGGACAGGCCGATGTCCTCGGCCTGCCCGACACC GGAGGCCAGGTAGTGTACATCCTGGACCAAGTCAAAGCGCTCGAGGAAGAGCTCCTCATCCGCATTTCCCAACAAGGACTCCTCCATTTCAAGCCCCAAA TCCTTGTTGTGACAAGGCTTATCCCCGATGCCAAGGGAACCAAATGCAACCAGGAATTGGAGAGCATCAATGGAACCAAGTACTCCAGCATTCTTCGTGT CCCTTTTCGCCTTGATGATGGCACCGTGCTGAAACAATGGGTCTCTCGATTCGATGTCTACCCTTACCTTGAGAGGTTCACTCAGGAAGTTACGACGAAA GTTGTGGATCTGATGGAAGGGAAGCCGGACCTCATCGTTGGTAACTATACTGATGGGAACTTGTGTGCGACGTTAATGGCTAATAAACTTGGTGTAACAC AGGCAACGATTGCGCATGCATTGGAGAAAACCAAATACGAGGATTCGGACATCAAGTGGAAGGAATTGGAACCCAAATACCATTTCTCCTGCCAGTTCAC TGCCGATATGATGGCTATGAACTCTGCTGATTTCATCATTGCCAGCACTTACCAAGAGATTGCTGGAAGCAAAGAGAGACCAGGTCAGTACGAATCCCAC GGAGCGTTCACAATGCCTGGTCTGGCTCGAGTTGTGTCCGGTATCAACATTTTCGACCCGAAGTTCAACATCGCTTGGCCTGGAGCTGACCAATCCTTCT ACTTCCCTTACACTGATAAACAGAGACGTTTCACCGAGTTCCATCCCGCCATTGAAGAACTTCTCTTCAGCAACAAGGACTCTCGAGACCACATTGGGTT CTTAGCAGACAAGAAGAAACCGATGATCTTCACAATGGCAAGGCTGGACACAGTGAAGAACATCACAGGGCTAACAGAATGGTACGGCAAAAGCAAGAGG CTAAGGAGCTTGGTCAACTTAGTCATAGTAGGAGGCTTCTTCGACCCGAACGAGTCAAAGGACAGAGAGGAAATGTCCGAGATTAAAAAGATGCACCTCT TGATCGACAAGTACAACCTCAAAGGTCAGATCAGATGGATAAGAGCACAGACAGATCGGAGGAGAAACGGAGAGCTGTACCGGTACATTGCAGATTCGAA AGGTGCATTCGTACAGCCCGCCCTTTACGAGGCGTTCGGGCTCACGGTGATTGAGGCCATGAACTGTGGACTGCCTAACTTTGTGACCAACCAAGGTGGC CCTGCTGAGATTGTTGTGGATGGTGTTTCCGGGTTTCATATTGATCCGAATAATGGGGATGAGGCGAGTAAGAAGATGGTTGAGTTTTTCGATAAGTGCA AGGCGGATTCTGGTTACTGGCACAAGGTTTCTGCTGCTGGATTGGCTCGTATCGAGGAATGTTACACATGGAGGATATATGCAAACAAGATGCTGAACAT GGGAAGCATGTATACGTTCTGGAGAATGCTGCATAAGGATCAGAAGCTGGCGAAACAGAGATACATTCAGCTGTTGTATAATCTACAGTTCAAGAATCTG GTGAAGAATGTGAAGATGCCAAAGGAAGAAGCAGAACAAAAGAAGCCAGTTCCTAGAGCAGCTTCCCCTACTCAGACGTAA
AA sequence Show only first row Show all	>Lus10007372 pacid=23166195 polypeptide=Lus10007372 locus=Lus10007372.g ID=Lus10007372.BGIv1.0 annot-version=v1.0 MASLKRSDSIADNMPEALRQSRYHMKKCFAKYVSKGRRIMKLQQLLDEMDNVIEDIPERRRLFEGLLGDIWHSTQEAVVNPPYVAFAIRPSPGFWEYVKV SSQDLSVEGVTSTEYLKYKELIYDQNWSEDEQALELDFGAFEPSVPHLTLSSSIGSGMNFVSKFITSNLSGKPENAQPLVDYLLSLNHHGQNLMINEALS TASKLQMALIVAEVHLSGIPEDTPYDKFELSLKEWGMERGWGDTAKTVKETMRYLSEVMQAPDPINMERFFSSSPTVFNVVVFSPHGYFGQADVLGLPDT GGQVVYILDQVKALEEELLIRISQQGLLHFKPQILVVTRLIPDAKGTKCNQELESINGTKYSSILRVPFRLDDGTVLKQWVSRFDVYPYLERFTQEVTTK VVDLMEGKPDLIVGNYTDGNLCATLMANKLGVTQATIAHALEKTKYEDSDIKWKELEPKYHFSCQFTADMMAMNSADFIIASTYQEIAGSKERPGQYESH GAFTMPGLARVVSGINIFDPKFNIAWPGADQSFYFPYTDKQRRFTEFHPAIEELLFSNKDSRDHIGFLADKKKPMIFTMARLDTVKNITGLTEWYGKSKR LRSLVNLVIVGGFFDPNESKDREEMSEIKKMHLLIDKYNLKGQIRWIRAQTDRRRNGELYRYIADSKGAFVQPALYEAFGLTVIEAMNCGLPNFVTNQGG PAEIVVDGVSGFHIDPNNGDEASKKMVEFFDKCKADSGYWHKVSAAGLARIEECYTWRIYANKMLNMGSMYTFWRMLHKDQKLAKQRYIQLLYNLQFKNL VKNVKMPKEEAEQKKPVPRAASPTQT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Lus10007372 [exp]	0	1
AT5G38960			RmlC-like cupins superfamily p...		Lus10006550 [exp]	12.6	0.7891
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Lus10006917 [exp]	23.1	0.7887
AT3G05670			RING/U-box protein (.1)		Lus10007973 [exp]	23.4	0.7932
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029316 [exp]	24.4	0.7883
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015746 [exp]	25.2	0.7888
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Lus10020791 [exp]	25.7	0.7304
AT3G04200			RmlC-like cupins superfamily p...		Lus10006549 [exp]	28.5	0.7728
AT4G35160			O-methyltransferase family pro...		Lus10008538 [exp]	31.2	0.7840
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10042210 [exp]	32.7	0.7839
AT1G11340			S-locus lectin protein kinase ...		Lus10030766 [exp]	33.0	0.7829

Compare expression of checked genes

Lus10007372 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.